Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3412 ATGTCGTGGGAAGACGAGATTGTGATGCGCGATGTTACGAATGCCGGCCTTGTTGTCAGCGATCGCATTGGTCGCGAAGTTTCGTCTCAGCTCGACCTCGAAGAAGCTCTAGAAGCTTCCAGATACGCTAGCCACCCTTATTCCACTCACCCCCGAGAGTGGCCCCCTTTAGTTGAGGTAGTGAATACCTGGGAGTTGCCTCCCGTGCTGATTGAAAGATACAATGCAGCTGGTGGGGAAGGAACTGCTTTTTGTGGAATATTTCCTGAAATACGAAGGGCGTGGGCATCTGTGGACAATTCATTGTTTCTTTGGCGTTTTGATAAGTGGGATGGCCAATGTCCTGAATATAGTGGGGAGGAGCAAGCTATTTGCGCAGTTGGTCTTGCAAAATCAAAACCTGGTGTTTTTGTTGAAGCTATCCAATATCTTTTAGTTTTAGCAACACCTGTTGAGTTAATTTTAGTAGGAGTATGCTGCTCTGGAGGAGCAGATGGTTCAGATCCATTCGCTGAAGTTACATTGCAGCCATTGCCAGAGCATACGATACCATCTGACGGGGTTACAATGACTTGTGTAGCATGTACTGATAAGGGTCGCATTTTCCTTGCTGGTCGGGATGGCCACATATATGAGGTTCATTATTCAACTGGTTCTGGATGGCAAAAACGCTGCAGAAAAGTCTGCATCACTGCTGGTTTAGGGAGTGTAATTTCAAGATGGGTTATACCAAATGTATTCAATTTTGGAGCTGTTGACCCCATTGTTGAAATGGTTTTCGACAATGAGAGACAAATATTGTATGCACGAACTGAAGAGATGAAGCTTCAGGTTTATGTTCTTGGACCGAATGGCGATGGCCCATTAAAGAAAGTGGCTGAAGAAAAGAATCTTGTCAATCAGAGGGATGCACATTATGGAGCTAGACAATCAACAGGATCAAGAGTCTCAAGTCGATCTCCAAAGCCAACTATTGTTTGCATCTCACCTTTATCTACACTTGAATCCAAGTGGCTACATCTTGTTGCTGTTTTATCGGATGGCAGAAGGATGTACCTATCTACCTCTCCTTCTAGTGGAAGCTTGACTGGGTTCAACACCAACCACCACAAGCCTAGCTGTTTAAAGATTGTCACTACAAGGCCTGCTCCTCCTTGGGGCGTTAGTGGTGGTCTCACGTTTGGAGCCATGGCTCTTGCTGGTAGACCTCAGAATGAGGATCTTTCCCTGAAAATTGAGGCAACTTATTATTCTGCTGGAACTCTTATCCTTTCTGATGCATCTCCTTCAACCATGCCTTCACTCCTTGTTTTGAACAGGGATTCAAGCACACAGTCATCACCACCAGGTAATCTAGGAACAAGTACGAGGAGTTCCCGTGCATTACGGGAGTCTGTGTCTTCTTTACCAGTTGAAGGACGAATGCTTTCTGTGGCAGATGTTTTACCTTTGCCAGATACCGCAGCTACTGTGCAGTCTCTATATTCAGAAATTGAGTTTGGTGGTTATGAGAGCTCTATGGAATCATGTGAAAGGGTGTCTGGCAAACTATGGGCAAGAGGAGATCTCTCAACCCAACATATACTGCCAAGAAGGAGGATTGTTGTCTTCAGCACCATGGGCATGATGGAAATTGTTTTTAACAGGCCACTGGACATTCTAAGGCGGCTATTGGAATCCAATTCCCCAAGATCAGTTTTAGAAGATTTCTTCAATCGTTTTGGTGCAGGTGAGGCAGCTGCAATGTGTCTAATGCTAGCTGCAAGAATAGGGCATTCTGAAAACCTTATCAGCAATGTTATTGCTGAGAAGGCAGCTGAAGCTTTTGAGGACCCAAGAGTTGTTGGCATGCCACAACTTGAAGGTAGTAGTGCATTATCAAACACAAGAAGTGCTGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAGGAGGCGGAGCCTGTTTTTTCAGGTGCACATGAAGGGCTCTGTTTGTGTTCATCTAGATTACTTTTTCCTCTATGGGAACTTCCTGTAATGGTTGTAAAAGGCAGAGTAGGTCCTTCGGGCACTCTATCTGAAAATGGGGTAGTTGTGTGCAGACTTTCTGTTGGGGCTATGCAAGTCCTTGAGCAGAAACTCCGATCTTTGGAGAAATTCTTAAGATCTAGAAGGAACCAGAGGAGGGGACTTTATGGCTGTGTAGCAGGTTTAGGAGATCTGAGTGGTTCCATTCTGTATGGTAATGGTTCGGCATTAGGTGCTGGGGATCGAAATATGGTGAGAAACTTATTTGGTGCACATTCCAGAAATATGGAGTCCAATGGTGGcagaacaactaataaaaggcaAAGGTTGCCATATAGTCCTGCTGAATTAGCTGCCATGGAGGTGAGGGCAATGGAGTGCATTAGGCAGTTGCTCCTTAGATCTGGTGAAGCCTTATTTTTGCTTCAACTTCTTTCACAGCATCATGTGACTCGATTGATTCAGGGATTTGATTCTAACCTTCAACAAGCTTTAGTTCAGTTGACATTTCATCAACTAGTTTGTTCTGAGGAGGGTGACCATCTTGCTACAAGACTTATATCTGCTCTCATGGAGTATTATACTGGTCCTGATGGCAGGGGGACTGTAGATGACATTAGTCGGAGATTGAGAGATGGTTGTCCAAGCTACTATAAGGAGTCCGATTACAAATTCTTCTTAGCAGTGGAAGCCCTGGAGAGAGCTGCTATAACCATAGATGCCAAGGACAAGGAGAATCTTGCAAGGGAAGCATTTAATTCCTTAAGTAAAGTTCCAGAGTCTGTGGACTTACGAACTGTTTGCAAACGTTTTGAGGATTTAAGATTTTATGAAGCTGTAGTGCGCTTACCTCTTCAAAAGGCACAGGCTCTTGATCCTGCAGGCAATGCTTATAATGATGAAATTGATGCAACTGTCAGAGAACAAGCACTTGCTCAGCGTGAGCAGTGTTATGAGATAATCATCAGTGCTTTGCGGTCTCTGAAAGGTGACACCTTGCAGAAGGAATTTGGCTCTCCCATTAGATCAACTGTTTCACAATCTGCTCTTGATCCAGCGTCtcggaaaaaatatatatgtcaaattGTTCAGCTGGGTGTCCAATCACCTGACAGAATTTTCCACGAGTATCTTTACCAGGCTATGATTGATTTAGGTCTGGAGAATGAATTGCTAGAGTATGGGGGTCCTGACCTGTTGCCATTTTTGCAGAGTGCCGGTCGTAGACCCATACACGAGGTTCGTGCTGTAGCTGCCACAACTTCTCCAGTGGGGCAATCGGGAGCACCTATGTCATCTAATCAAGTCAAGTACTATGAACTTTTGGCACGGTATTACGTCTTGAAACGCCAACATATGCTTGCAGCTCATGCATTGCTAAGACTAGCTGAAAGGCGTTCTAGTGATGGAGTTCCTACTCTTGAACAGAGGTATCAATACCTTAGTAATGCAGTTCTACAGGCAAAAAATGCAACTAATAGTGATGTAGGTTCTGCTCGAAGTTCCATTGACAGTGGGTTCCTAGATTTGCTTGAAGGGAAGCTTGCTGTTCTTCGgttccaaataaaaatcaaagaagaacTAGAGTCTATGGCTTCCAGGTCTGAGGTTTTACCTAGCACCCCAGACTCTGCCCAAAATGGTGTAGTCCCTGATGGCAGTTCAACTGCTGATGCTAATTTTGCAAATGCAACACGAGAGAAGGCCAAAGAGCTAGCTTCAGATGTAAAGAGCATAACACAGTTATATAATGAATATGCTGTTCCCTTTGGACTCTGGGAGATATGCCTGGAGATGCTGTACTTTGCCAATTATTCTGGTGATACTGATAGCAGCATTGTCAGAGAGACATGGACTAGACTTATAGATCAAGCTATATCAAGAGGGGGCATTGCTGAAGCTTGCTCAGTACTAAAGAGGGTTGGGCCCCGCATTTATCCTGGTGATGGAGCTGTTTTACCACTTGACATTATTTGTCTTCACCTAGAGAAGGCTGGACTGGAGAGGTTGAATTCAGGGGTCGAATCCGTTGGAGATGAAGATGTTGCAAGAGCCCTTGTTTCTGCTTGTAAGGGTGCAGCTGAACCTGTATTGAACGCATATGACCAATTGTTATCAAATGGGGCTATTTTGCCGTCCCCAAGTGTTAGATTACGTATGCTGAGATCGGTTCTAGTGGTACTTCGAGAGTGGGCAATGTCTGTATATTCACAAAGGATGGGTACCAGTGCCGGTGGGCCTTCCCTAATATTAGGTGGAGGATTCTCATTGGAACGTACTGTTGCTAGCCAAGGAATTCGGGACAAGATCACAAGCGCGGCAAACAGGTACATGACAGAAGTACGGAGGTTAGCCCTTCCACAGAACCAAACAGAACACGTCTACCGAGGCTTTAGAGAACTTGAAGAATCGTTTATAAGCCAACATTCATTTGATCGATTTTGA 4452 0.4423 MSWEDEIVMRDVTNAGLVVSDRIGREVSSQLDLEEALEASRYASHPYSTHPREWPPLVEVVNTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSGEEQAICAVGLAKSKPGVFVEAIQYLLVLATPVELILVGVCCSGGADGSDPFAEVTLQPLPEHTIPSDGVTMTCVACTDKGRIFLAGRDGHIYEVHYSTGSGWQKRCRKVCITAGLGSVISRWVIPNVFNFGAVDPIVEMVFDNERQILYARTEEMKLQVYVLGPNGDGPLKKVAEEKNLVNQRDAHYGARQSTGSRVSSRSPKPTIVCISPLSTLESKWLHLVAVLSDGRRMYLSTSPSSGSLTGFNTNHHKPSCLKIVTTRPAPPWGVSGGLTFGAMALAGRPQNEDLSLKIEATYYSAGTLILSDASPSTMPSLLVLNRDSSTQSSPPGNLGTSTRSSRALRESVSSLPVEGRMLSVADVLPLPDTAATVQSLYSEIEFGGYESSMESCERVSGKLWARGDLSTQHILPRRRIVVFSTMGMMEIVFNRPLDILRRLLESNSPRSVLEDFFNRFGAGEAAAMCLMLAARIGHSENLISNVIAEKAAEAFEDPRVVGMPQLEGSSALSNTRSAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLFPLWELPVMVVKGRVGPSGTLSENGVVVCRLSVGAMQVLEQKLRSLEKFLRSRRNQRRGLYGCVAGLGDLSGSILYGNGSALGAGDRNMVRNLFGAHSRNMESNGGRTTNKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHVTRLIQGFDSNLQQALVQLTFHQLVCSEEGDHLATRLISALMEYYTGPDGRGTVDDISRRLRDGCPSYYKESDYKFFLAVEALERAAITIDAKDKENLAREAFNSLSKVPESVDLRTVCKRFEDLRFYEAVVRLPLQKAQALDPAGNAYNDEIDATVREQALAQREQCYEIIISALRSLKGDTLQKEFGSPIRSTVSQSALDPASRKKYICQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLQSAGRRPIHEVRAVAATTSPVGQSGAPMSSNQVKYYELLARYYVLKRQHMLAAHALLRLAERRSSDGVPTLEQRYQYLSNAVLQAKNATNSDVGSARSSIDSGFLDLLEGKLAVLRFQIKIKEELESMASRSEVLPSTPDSAQNGVVPDGSSTADANFANATREKAKELASDVKSITQLYNEYAVPFGLWEICLEMLYFANYSGDTDSSIVRETWTRLIDQAISRGGIAEACSVLKRVGPRIYPGDGAVLPLDIICLHLEKAGLERLNSGVESVGDEDVARALVSACKGAAEPVLNAYDQLLSNGAILPSPSVRLRMLRSVLVVLREWAMSVYSQRMGTSAGGPSLILGGGFSLERTVASQGIRDKITSAANRYMTEVRRLALPQNQTEHVYRGFRELEESFISQHSFDRF 1483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3412 1483 Gene3D - 894 1054 IPR042533 -
Ssu5g3412 1483 MobiDBLite consensus disorder prediction 440 466 - -
Ssu5g3412 1483 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 875 1290 IPR007187 -
Ssu5g3412 1483 Gene3D - 1178 1413 IPR042538 -
Ssu5g3412 1483 Pfam Nup133 N terminal like 54 543 IPR014908 -
Ssu5g3412 1483 PANTHER BNAC05G49530D PROTEIN 2 1480 - -
Ssu5g3412 1483 Coils Coil 700 720 - -
Ssu5g3412 1483 Gene3D Nucleoporin, helical domain, central subdomain 1057 1154 IPR042537 -
Ssu5g3412 1483 MobiDBLite consensus disorder prediction 440 465 - -
Ssu5g3412 1483 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 2 1480 IPR004870 GO:0005643|GO:0006913|GO:0017056
Ssu5g3412 1483 Gene3D - 531 883 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3412 5 84475747 84486723 Ssu5g3412 5 84475747 84486723 ECH