Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3411 ATGGCCGATGCTCTCTCGTTGATTCCGGCAGCCGTGCTTCGCAACCTTGCTGACAAGCTCTACGAGAAGCGAAAAATGCTGCTCTTGATGTTTattgAGGGGATAGTGAAGCAGCTAGCTGCTGCTGGGGATCATGATAAAATAACGGCTGTGATCAATTTGTTGACTGCGGATTTTACTTATTCACCACTAGCCAATCACCGGAAGGGAGGATTGATAGGATTAGCAGCTGCAACTGTTGGGTTGACTTCTGAAGCAGCTCAGCATCTCGAGCAAATTGTGCCCCCTGTGTTAAATTCTTTCTCTGACCAAGATAGCAGAGTTCGTTATTATGCTTGCGAAGCCCTATATAACATTGCCAAGGTTGTGAGAggggattttattattttcttcaaccaGATATTTGATGCCTTATGTAAGCTTTCTGCAGACTCAGATGCCAATGTACAAAGTGCTGCTCACCTCTTAGATAGGCTTGTGAAGGACATTGTCACTGAAAGTGATCAGTTCAGTATTGAAGAATTTATACCACTTTTGAGGGAACGCATGAATGTGTTGAATCCATATGTCCGCCAGTTTTTGGTAGGATGGATTACTGTATTGGACAGTGTCCCAGATATTGATATGCTGGGTTTTCTACCTGATTTTCTTGATGGCTTGTTTAATATGTTGAGTGATTCGAGTCATGAAATTCGGCAGCAAGCCGATTCAGCTCTTTCAGAGTTTCTTCAAGAGATTAAGAACTCTCCATCTGTAGATTATGGTCGCATGGCTGAAATACTGGTACAGAGGGCAGGTTCTCCAGATGAATTTACTAGGCTAACAGCTATCACTTGGATAAATGAGTTTGTCAAGCTTGGTGGAGACCAGCTGGTTCCATATTATGCTGACATTCTTGGAGCCATTTTGCCTTGTATATCagataaagaagagaaaatcaGAGTTGTTGCTCGTGAAACCAATGAAGAGCTACGTGCCCTCAAGGCTGATCCAGCTGAAACATTTGATGTAGGAGCAATCCTCTCCATTGCCAGGAGGCAATTATCTAGTGAATGGGAGGCTACTCGAATCGAATCTTTGCACTGGATATCAACCCTTTTAAACAAATATCGTAATGAGGTTTTGCAATTTCTGAATGACATATTTGACACCCTGCTCAAGGCACTTTCAGATCCATCTGATGAGgTTGTTCTTCTAGTTCTTGATGTTCATGCATGCATTGCAAAAGATCCTCAGCACTTTCGGCAACTTGTTGTTTTCCTGGTGCACAATTTCCGGGTAGACAATTCCCTTTTGGAGAAGCGTGGTGCGTTGATAATTCGTCGGCTTTGTGTGCTTTTGAATGCTGAGAGAGTCTACCGTGAACTTTCTACAATACTAGAAGGGGAATCTGACTTGGATTTTGCATCAATTATGGTTCAGgCTTTGAATTTGATCTTACTTACATCATCGGAATTATCCGAGATTCGAGATCTTTTAAAGCAATCACTTGTAAATCCTGCGGGGAAGGATTTATATGTTTCTTTGTATGCCTCATGGTGCCATTCTCCAATGGCAATTATAAGTCTCTGCTTATTAGCTCAGACTTACCAACATGCGAGTGCTGTGATTCAATCTCTGGTTGAGGAGGATATTAATGTCAAATTCTTAGTCCAGCTGGATAAATTGATTCGCTTGCTGGAAACTCCAATCTTTGCTTATCTAAGATTGCAGCTTCTCGAACCTGGAAGATATACATGGTTGTTTAAAGCATTGTATGGTCTTCTTATGTTGCTTCCTCAGCAAAGTGCTGCCTTCAAGATTCTCAAAACTCGTTTAAAAGCTGTGCCATCGTACTCCTTCAATGGTGAGCAATTGAAGAAGACATCCTCAGGGAATCCCTATCAATTTCTCAATCACATGTCTGGTGACATAGCTATGGACGGTGGGAACTCACACAATGGGATAAATTTTGCTGCAAGGCTACAACAGTTTCAGCAAATGCAGCACCAGCATCGTGAGCATTTGAAAACACAGACACAGTCACGCAAAAATTCCTCCTCATCGTCGAAGGAGGTAGAGACGGGAAGAACCCAGGCGACTTCAGTTGGGTGA 2094 0.4169 MADALSLIPAAVLRNLADKLYEKRKMLLLMFIEGIVKQLAAAGDHDKITAVINLLTADFTYSPLANHRKGGLIGLAAATVGLTSEAAQHLEQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAGSPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRALKADPAETFDVGAILSIARRQLSSEWEATRIESLHWISTLLNKYRNEVLQFLNDIFDTLLKALSDPSDEVVLLVLDVHACIAKDPQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLNAERVYRELSTILEGESDLDFASIMVQALNLILLTSSELSEIRDLLKQSLVNPAGKDLYVSLYASWCHSPMAIISLCLLAQTYQHASAVIQSLVEEDINVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLFKALYGLLMLLPQQSAAFKILKTRLKAVPSYSFNGEQLKKTSSGNPYQFLNHMSGDIAMDGGNSHNGINFAARLQQFQQMQHQHREHLKTQTQSRKNSSSSSKEVETGRTQATSVG 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3411 697 MobiDBLite consensus disorder prediction 662 697 - -
Ssu5g3411 697 Gene3D - 248 410 IPR011989 -
Ssu5g3411 697 Pfam Vacuolar 14 Fab1-binding region 66 162 - -
Ssu5g3411 697 PANTHER PROTEIN VAC14 HOMOLOG 4 691 - -
Ssu5g3411 697 MobiDBLite consensus disorder prediction 674 697 - -
Ssu5g3411 697 PANTHER TAX1 BINDING PROTEIN-RELATED 4 691 IPR026825 GO:0006661|GO:0070772
Ssu5g3411 697 Pfam Vacuolar protein 14 C-terminal Fig4p binding 430 609 IPR021841 -
Ssu5g3411 697 ProSiteProfiles HEAT repeat profile. 93 128 IPR021133 -
Ssu5g3411 697 SUPERFAMILY ARM repeat 4 546 IPR016024 -
Ssu5g3411 697 Gene3D - 1 247 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3411 Ssu-Chr5 84433563 84443179 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3411 5 84433563 84443179 Ssu5g3411 5 84433563 84443179 ECH