Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3410 ATGATGGAGGCGAAGGGTGTGCGGTTCTTAGCATACCAATCAATATTTTCGAGCGTTGGATCTGGGGACTTTGATGGGGTGAAGAAAGTGGTGGAGCAAGTGAAGAAGGAAGAAGGGTCGTCGCTCTCTGATGTGATGTCCCTTCAGAACGATGCTGGAGAGACCGCACTTTACATCGCTGCAAAGAATAATCTGCAAGAGATTTTCAGCTTCTTGCTCAGCTTGTGTGACTTTGAGGTCGTCAAGATTCGCTCCAAGTCTGATATGAACGCCTTTCATGTTGCCGCCAAGCGTGGCCATCTAGATATTGTGAGGGAGCTTTTGAATACTTGGCCTGAGGTTTGTAAGTTATGCGACTCCTCAAACACCAGTCCTCTATATTCTGCTGCAGGTCAAGACCACTTGGATGTGGTGAATGCTATCTTGGATGTTGATGTCGGTTCCATGTTTATAGTTAGGAAAAACGGCAAAACTTCATTGCACAATGCTGCTAGGTATGGCGTCCTTCGTATTGTAAAAACACTTATGGCTCGGGATCCTGGAATAGTATGCATCAAAGATAAAAAGGGTCAAACTGCACTGCATATGGCTGTCAAAGGACAGTGTACTTCAGTGGTGGAGGAGATATTACTATGTGATCCTTCTATATTGAATGAGCGAGATAAGAAGGGTAATACAGCTCTTCACATGGCTACGAGGAAATGCCGTTCACAGATAGTGACCCTTTTGCTAATCTATTCTGCTATGGATGTTAATGCCATCAACAAGCAGCAGGAAACAGCCTTGGATTTGGCTGATAAACTGCCATACGGAGAATCGGCTTTGGAAATCAGGGAAGCCCTTGCAGAATATGGTGCTAAGCATGCCAGGCATGTTGGCAAAGTAGATGAAGCAATGGAACTTAAAAGAACTGTGAGTGATATAAAGCATGAGGTGCGGTCACAACTTATCCAAAATGAAACGACTCGCCGACGGGTTTCTGGCATTGCCAAGGAGTTGAAGAAACTTCATAGAGAAGCAGTTCAAAACACCATTAATTCTGTCACAGTCGTTGCTGTCCTTTTTGCCTCAATAGCATTCTTGGCCATCTTCAATTTGCCGGGCCAATATATAACGGACGGACCAGAGACTGGGGAAGCTAATATAGCCCATCATGTTAATGTAGGTTTCCAAGTTTTCTGCCTTCTGAATTCTACATCTCTTTTCATTTCCCTTGCAGTTGTTGTAGTCCAGATCACTTTGGTTGCCTGGGACACAAGGGCTCAAAGGCAGATTGTGTCAGTGGTTAACAAGTTGATGTGGGCTGCATGTGCTTGCACTTGTGGTGCTTTTCTAGCAATAGCTTTTGAGGTTGTTGGAGAGAAAACATGGATGGCTATCACCATAACCATTTTGGGAGTACCTATTCTAGTTGGCACTCTAGCAAGCATGTGCTACTTTGTTTTTCGACAACATTTTGGGATTTTCCGCAGTGATTCCCAGAGACGCATCAAGAGAGCAAATGGAAGCAAATCTTTCTCGTGGTCTTACTCTGCAAACATATCAGATTTGGATGAATATAATTCTGACATTGAGAAGATCTATGCCCTGTGA 1593 0.4407 MMEAKGVRFLAYQSIFSSVGSGDFDGVKKVVEQVKKEEGSSLSDVMSLQNDAGETALYIAAKNNLQEIFSFLLSLCDFEVVKIRSKSDMNAFHVAAKRGHLDIVRELLNTWPEVCKLCDSSNTSPLYSAAGQDHLDVVNAILDVDVGSMFIVRKNGKTSLHNAARYGVLRIVKTLMARDPGIVCIKDKKGQTALHMAVKGQCTSVVEEILLCDPSILNERDKKGNTALHMATRKCRSQIVTLLLIYSAMDVNAINKQQETALDLADKLPYGESALEIREALAEYGAKHARHVGKVDEAMELKRTVSDIKHEVRSQLIQNETTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYITDGPETGEANIAHHVNVGFQVFCLLNSTSLFISLAVVVVQITLVAWDTRAQRQIVSVVNKLMWAACACTCGAFLAIAFEVVGEKTWMAITITILGVPILVGTLASMCYFVFRQHFGIFRSDSQRRIKRANGSKSFSWSYSANISDLDEYNSDIEKIYAL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3410 530 ProSiteProfiles Ankyrin repeat region circular profile. 155 176 - -
Ssu5g3410 530 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 4 530 - -
Ssu5g3410 530 Gene3D - 14 148 IPR036770 -
Ssu5g3410 530 Pfam Ankyrin repeats (3 copies) 43 109 IPR002110 GO:0005515
Ssu5g3410 530 Pfam Ankyrin repeats (3 copies) 127 211 IPR002110 GO:0005515
Ssu5g3410 530 ProSiteProfiles Ankyrin repeat profile. 223 256 IPR002110 GO:0005515
Ssu5g3410 530 Pfam Domain of unknown function 339 448 IPR026961 -
Ssu5g3410 530 Pfam Ankyrin repeat 224 255 IPR002110 GO:0005515
Ssu5g3410 530 ProSiteProfiles Ankyrin repeat profile. 155 176 IPR002110 GO:0005515
Ssu5g3410 530 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 4 530 - -
Ssu5g3410 530 SMART ANK_2a 155 184 IPR002110 GO:0005515
Ssu5g3410 530 SMART ANK_2a 189 218 IPR002110 GO:0005515
Ssu5g3410 530 SMART ANK_2a 87 116 IPR002110 GO:0005515
Ssu5g3410 530 SMART ANK_2a 121 151 IPR002110 GO:0005515
Ssu5g3410 530 SMART ANK_2a 52 80 IPR002110 GO:0005515
Ssu5g3410 530 SMART ANK_2a 223 253 IPR002110 GO:0005515
Ssu5g3410 530 Gene3D - 149 307 IPR036770 -
Ssu5g3410 530 SUPERFAMILY Ankyrin repeat 15 286 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3410 Ssu-Chr5 84428582 84432358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3410 2 530 Miscellaneous Gene Families AT2G01680 68.089 0.0 724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3410 5 84428582 84432358 Ssu5g3410 5 84428582 84432358 ECH