Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3407 ATGGCTACTTCGAAGGCGGTAATGTGTTCGTTGACCCAGTTGCGTCCGCTAACATGCGCCGCTTCGGCATCGGCGTCACGATTAGTGTCCCACCCACCCGACCTCATAAAGTGGGTAACCAGAGAAGGCGGCTTCGTGCACCGCGCGGTGAAGATAGCACAACTCGACTCCTCCAATGGACTGGGCCTAGTGGCCAAGGAAGAAATTCCACGTGGCAGTGACCTTATTGTTCTCCCGCACCACCTTCCCTTGCGCTTCACCTCTCTCGAACAAGAAGACCCTCTGTTGCATGACTTGGCGCGCCAAGTCCCCGAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGAGCAAAGGTTGGATCGTTCTGGTGGCCATATATCAGCAATCTCCCAGAAGCATACACTGTGCCTATTTTCTTTCCTGGGGAGGACATAAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTAAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCGTGCCGTAGGAAATCTTACACCAGATAAGCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCATTCCGGTTATATGGTGAAAAGGATCCCGATGGGATACGCATTGACATACCGATGATGCTCCCTCTAATTGATATGTGCAATCATAGTTTCAATCCGAATGCTAAAATGGTTCAGGAACAAGATACCAGTAGCATGAAGATGCAAGTGAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTTTGTTACTTTGCTATGGCTGTTTAAACAATGATCTTTTCCTTCTTGATTATGGATTTGTGGTACACTCAAACCCTTATGATTGTATTGAGCTCAGATATGATGGTGCCCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCAAACTTCTCGGCACCTGCTCCATGGCAGGAACTGATTTTATCTCAGCTGAACCTAGCTGGAGAAACTCCAGATTTCAAGGTGAGCTTAGGTGGTCAAGAAACAGTAGATGGCCGCTTGTTGGCTGCATTGAGAGTACTCCTTTCAAGTAATATGGAAATTGTGCAGAAGTATGACCTCGGCACACTCCAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGACATAGCTGTATTTCGCACCCTAATTGCTTTATGTGTCATTGCACTGGGACACTTTCCCACCAAAATAATGGATGATGAATCACTGTTGAAGCAGGGTGCTTCAGGTTCAACCGACTTAGCCATTCAGTACAGAATCCAAAAGAAATCTTTGATTATAGACGTAATGAAAAATCTCTCAAAGAGGGTAAAGCTTCTATCATCAAAGGAAACTGCAACTGCCGAAGGCCAAGTGACAGTGAACAATTAG 1440 0.4611 MATSKAVMCSLTQLRPLTCAASASASRLVSHPPDLIKWVTREGGFVHRAVKIAQLDSSNGLGLVAKEEIPRGSDLIVLPHHLPLRFTSLEQEDPLLHDLARQVPEELWAMKLGLKLLQERAKVGSFWWPYISNLPEAYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQEVKRAVGNLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDPDGIRIDIPMMLPLIDMCNHSFNPNAKMVQEQDTSSMKMQVKVVAETAIKEDDPLLLCYGCLNNDLFLLDYGFVVHSNPYDCIELRYDGALLDAASMAAGVSSPNFSAPAPWQELILSQLNLAGETPDFKVSLGGQETVDGRLLAALRVLLSSNMEIVQKYDLGTLQSLDAEAPLGVANDIAVFRTLIALCVIALGHFPTKIMDDESLLKQGASGSTDLAIQYRIQKKSLIIDVMKNLSKRVKLLSSKETATAEGQVTVNN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3407 479 CDD SET_LSMT 49 292 - -
Ssu5g3407 479 SUPERFAMILY SET domain 33 296 IPR046341 -
Ssu5g3407 479 PANTHER F21J9.27 5 470 - -
Ssu5g3407 479 Gene3D - 328 471 IPR036464 -
Ssu5g3407 479 SMART set_7 48 284 IPR001214 GO:0005515
Ssu5g3407 479 Gene3D set domain protein methyltransferase, domain 1 6 291 - -
Ssu5g3407 479 ProSiteProfiles SET domain profile. 50 278 IPR001214 GO:0005515
Ssu5g3407 479 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 470 - -
Ssu5g3407 479 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 288 467 IPR036464 -
Ssu5g3407 479 Pfam Rubisco LSMT substrate-binding 327 447 IPR015353 -
Ssu5g3407 479 Pfam SET domain 60 278 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu5g3407 SET 1.5e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3407 5 84382500 84385208 Ssu5g3407 5 84382500 84385208 ECH