Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3399 ATGCCAAACACAAACATgcatctctttcttctctttattcTGGCACTCTTCTCAGCCATGACAACCCCGTCAACCTCCGCCATCGACTCCTTCATCTTCGGCGGTTGCTCTCAGCCGAAGTACACGCCGGGTTCGGCCTACGAGAACAGCGTGAACTCGCTCCTGACCTCGCTGGTCAACTCGGCTGCGTTCGCCAACTTCAACAACTTAACCGTCCAGGGCGGCACCGCCTCGTCGGACGCCGTCTACGGCCTCTTCCAGTGCCGCGGCGACCTCGGCAACGACCAGTGCTCGCGCTGCGTGGCGCGTGCGGTCACCCAGCTCGGCACGCTCTGCCTCGACTCGTGCGGCGGCGCGTTGCAGCTCGAAGGCTGTTTCGTCAAGTACGACAATGCCACGTTCCTCGGGGTGGAGGACAAGACCCTGGTGGTCAAGAAATGCGGGCCGTCCGTTGGGTTGACCTCCGACGCGTTGACCCGGCGGGACGCTGTGCTGGCGTATCTGCAGACGTCCGATGGGGTTTACAAGACGTTCAGGACAAGCGGGTTTGGGGATTTTCAGGGTGTGGCGCAGTGCACGGGGGATTTGAGTCCCAGCGAGTGCCAGGATTGTCTCTCTGATGCCATCCAACGGTTGAAAACCGACTGCGGGCCCTCCCCCTGGGCCGAGATCTACCTGGCCAAGTGCTACGCGCGCTACTCCGAAGGGGACACTCACTCGCGCCCCAGTAATGACGATAGCAATCACAATGATGATGAGATTGAGAAGACACTCGCTATACTAATTGGACTCATTGCCGCGGTTGCTCTAATCATCGTTTTCCTTTCCTTCTTGTCGAAGGTCTGCGAAAAGCACAAAGGTggtaaataa 870 0.5724 MPNTNMHLFLLFILALFSAMTTPSTSAIDSFIFGGCSQPKYTPGSAYENSVNSLLTSLVNSAAFANFNNLTVQGGTASSDAVYGLFQCRGDLGNDQCSRCVARAVTQLGTLCLDSCGGALQLEGCFVKYDNATFLGVEDKTLVVKKCGPSVGLTSDALTRRDAVLAYLQTSDGVYKTFRTSGFGDFQGVAQCTGDLSPSECQDCLSDAIQRLKTDCGPSPWAEIYLAKCYARYSEGDTHSRPSNDDSNHNDDEIEKTLAILIGLIAAVALIIVFLSFLSKVCEKHKGGK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3399 289 Gene3D - 155 236 IPR038408 -
Ssu5g3399 289 Gene3D - 28 134 IPR038408 -
Ssu5g3399 289 ProSiteProfiles Gnk2-homologous domain profile. 29 134 IPR002902 -
Ssu5g3399 289 PANTHER PLASMODESMATA-LOCATED PROTEIN 6 4 286 - -
Ssu5g3399 289 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 4 286 - -
Ssu5g3399 289 ProSiteProfiles Gnk2-homologous domain profile. 139 238 IPR002902 -
Ssu5g3399 289 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Ssu5g3399 289 Pfam Salt stress response/antifungal 177 234 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3399 Ssu-Chr5 84266651 84268889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3399 4 233 Receptor kinase-like Gene Family AT4G05200 24.481 3.82e-15 73.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3399 5 84266651 84268889 Ssu5g3399 5 84266651 84268889 ECH