Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3396 ATGGTGATTTTGTGGGTATGTGTAGGTTTCACAAAGAGTTCGATTGCACAGTGGCCCTTCTCGAACAAAGTATCTGCCCTTCCACATTTGATGTCTTTCAAGGCTTCTCAAGATGATAAGACTAAGAAGATAGTGTCTGATCCCTTAACTTCTTCTGGGTTTATGTCTATCTTAAGCCAAGATGCATTTGACTCTAGTCAGAAACGCTCTGCTGGTGAACCCCAGaAATCTTTCAATCACGATGGGCAGGATGGCCTTCATTTTTCGCTGACTCCATATCCTGTACAACATGATGTGAATTCTGTGAATCGTCCTCATGATGTGAAGATGTTTTCAGTTTCCAATCAAGCAATTTCAGTTTCCTTGGGGAATCCATTCCTGAAGAATCATTTTGCAACTGCTGGTCAGAATATGAATGGCCCTAATGTGAAGCAGCCATTACTTGGGGGAATACCTGTTACGGCGCCTCATTCAGTTCTTCCTTCTGTTGGTGCTGTTGCTGGAATGACTGAAccatgTGTGAAATCATCCGCGCCTTCTGCCCAACTTACCATCTTCTATGCGGGTACTGTCAATGTCTTTGATGATATCTCTGCCGAGAAGGCACAAGCTATCATGTTGTTGGCTGGCAATAGCTTATCTGTATCGTCTAACATGGTGCAGCCAAAAGTTCAGGTGCCTGTCTCAAAGTTGGCTGCTGGTGACGGTGTGCCTGTGAGTCAACCTGCAAATACACCACCTGGCTCTGGTTTTTCAAGTCCTTTATCTGTTTCTTCACATACTGGTGCACAGTCAGGGAGTGGCTCAACTAGCACTGATGAATTTCTGGCTACTAAAACAACTGGAGTTCCCACCACTCCTGTTAGCAATGTGGAGCGTCCAAAGGCAGTCAATGCAACCACTATGTTGACATCAGCTGTACCTCAGGCTCGGAAAGCATCCTTGGCTCGATTTTTAGAAAAACGCAAGGAAAGGGTGATGAGTGCAGCACCATATAACCTCAACAAGAAGTCTGAAGACTGTGCCACTGCAGAGTACGCTGGTGCTAACTTTTCTGCAGGTACTGCGACTAATACTGTCTCGGCCAAGTAA 1092 0.4515 MVILWVCVGFTKSSIAQWPFSNKVSALPHLMSFKASQDDKTKKIVSDPLTSSGFMSILSQDAFDSSQKRSAGEPQKSFNHDGQDGLHFSLTPYPVQHDVNSVNRPHDVKMFSVSNQAISVSLGNPFLKNHFATAGQNMNGPNVKQPLLGGIPVTAPHSVLPSVGAVAGMTEPCVKSSAPSAQLTIFYAGTVNVFDDISAEKAQAIMLLAGNSLSVSSNMVQPKVQVPVSKLAAGDGVPVSQPANTPPGSGFSSPLSVSSHTGAQSGSGSTSTDEFLATKTTGVPTTPVSNVERPKAVNATTMLTSAVPQARKASLARFLEKRKERVMSAAPYNLNKKSEDCATAEYAGANFSAGTATNTVSAK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3396 363 MobiDBLite consensus disorder prediction 237 274 - -
Ssu5g3396 363 SMART tify_2 176 211 IPR010399 -
Ssu5g3396 363 PANTHER PROTEIN TIFY 7 12 355 - -
Ssu5g3396 363 Pfam tify domain 178 210 IPR010399 -
Ssu5g3396 363 ProSiteProfiles Tify domain profile. 176 211 IPR010399 -
Ssu5g3396 363 MobiDBLite consensus disorder prediction 242 274 - -
Ssu5g3396 363 Pfam Jas motif 308 332 IPR018467 -
Ssu5g3396 363 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 12 355 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3396 Ssu-Chr5 84211765 84214910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3396 18 341 Tify Gene Family AT3G17860 38.372 5.41e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu5g3396 tify 5.5e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3396 5 84211765 84214910 Ssu5g3396 5 84211765 84214910 ECH