Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2350 ATGGCGGCGGACAAGGGTGTTGAGACGGTGGCATTGGAGTGTTTGGGAAAAGGGTTCGATTTGGCCAGCGATTTTCGCTTGAGGTTTGCAAAGCGAATTCGCGGAGGGAGGTTGGTGGTGCTCGATGAACAGAACAAGAGGGATATTTTGATTCCTGGAACCGGAGGGGTTACCATTAAAGGGGTTTCTGAGAATATTCGTTGTGATAAAGGGGACAGAATTCGCTTCAAGTCTGATGTACTAGAATTCAACCAGATGTCTGAGTTGCTTAATCAGAAATCAGTAGTGCAAGGGAAAGTTCCTTCTGGCTATTTTAATGCGCTTTTTGATTTGAGTGGGGATTGGTTTCGTGACGCTGCTGACACCAAATACCTTGCTTTTGATGGGTATTTCATTTCACTCTACTATTTGCACCTCACTGCTTCTCCACTCATACTGCAAGAGGAGGTAAAGAAGTCTGTTCCGGCTCAGTGGGATCCAGCTTCATTGTCTAGGTTCATCCAGACATATGGTACACACATAATAGTGGGTATGGCTGTAGGAGGTCAAGATGTAATCTGTGTCAAACAAAAACATTCTTCGAAGATTCCTCCTGGTGATCTCAGAAGACATTTGGAGGATCTTGGAGATTTTTTATTCTCAGATGTGAGAAGCCCTTCTTTACTACAGAGGAAGACGGCAGATGGCAAACAGAAGGTCCCTGAGGTCTTTAACCGTGTGATGCAATCAAACACAATGCAGTTCACTAGTATTTCAGAAACATCAAGCAAGGACGGCCTCACTATTATTTGCTCAAAAAGAGGAGGAGATATGTTCAAGCAGAGTCACTCAAATTGGCTTCAGACAGTGCCTTCTAACCCTGAAGCAATTCTCTTCAAGTTTGTTCCTATTTCCTCACTTTTGACAGGAATTCCTGGAAGTGGATATCTTAGTCATGCAATCAATCTGTATCTACGCTATAAGCCTTCTCCTGAAGATTTACAATACTTTTTGGAGTTTCAAATTCCCAGACAATGGGCACCAATGTTTTGCGAGCTGCCGCTCAGGCATCAGCGGAGAAAGACTGCTTCCCCTTCCCTGCAATTTAGTTTCATGGGTCCAAAGCTTCATATCATATCTACACAGGTGGTAAGTGAACAAAAACCTGTAGTTGGCCTACGCTTGTACTTGGAGGGCAGGAAATGTGACAGGCTTGCTTTACATATACATCATCTTTCAAGCCTCCCAAATAAAATGATCCCCTCTTCAGGAACCTCAACCTCTAGTATGCCATCTATGTGGCGAGGATCTGATGATAATGATTCCAGTGATCAATTCCTGGAACGAATCAGATGGAAGAGATTCTCAAATGTGTGCACAGCAGTGGTTAAGCATGACCCTAACTGGTTGAATAGTTCTGGAGGTGTTTATATTGTAACTGGTGCGCAACTCCTTTGCAAAGGGAGTTGGCCAAGGAATGTGCTTCATCTGCGCCTTCTCTTTACTCATATACCCAATTGCGGTATCCGGAAGTCAGAGTGGGCTGGTGCACCAGAGGCTTCAAGAAAAACAtcttttctcacaaatttgAGCACAACATTTTCATTCACACAGCAGAGCACCACTGGTCCTCCAAAGCAGGCTCCAACTGTGCTTAACTCTGGAGTTTATCCAGACGGTCCACCTGTGCCAGTTCGCTCCTGGTAA 1686 0.4419 MAADKGVETVALECLGKGFDLASDFRLRFAKRIRGGRLVVLDEQNKRDILIPGTGGVTIKGVSENIRCDKGDRIRFKSDVLEFNQMSELLNQKSVVQGKVPSGYFNALFDLSGDWFRDAADTKYLAFDGYFISLYYLHLTASPLILQEEVKKSVPAQWDPASLSRFIQTYGTHIIVGMAVGGQDVICVKQKHSSKIPPGDLRRHLEDLGDFLFSDVRSPSLLQRKTADGKQKVPEVFNRVMQSNTMQFTSISETSSKDGLTIICSKRGGDMFKQSHSNWLQTVPSNPEAILFKFVPISSLLTGIPGSGYLSHAINLYLRYKPSPEDLQYFLEFQIPRQWAPMFCELPLRHQRRKTASPSLQFSFMGPKLHIISTQVVSEQKPVVGLRLYLEGRKCDRLALHIHHLSSLPNKMIPSSGTSTSSMPSMWRGSDDNDSSDQFLERIRWKRFSNVCTAVVKHDPNWLNSSGGVYIVTGAQLLCKGSWPRNVLHLRLLFTHIPNCGIRKSEWAGAPEASRKTSFLTNLSTTFSFTQQSTTGPPKQAPTVLNSGVYPDGPPVPVRSW 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2350 561 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 331 IPR020864 -
Ssu5g2350 561 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 4 560 IPR044663 GO:0006952|GO:0012501|GO:2000031
Ssu5g2350 561 MobiDBLite consensus disorder prediction 413 433 - -
Ssu5g2350 561 Pfam MAC/Perforin domain 105 317 IPR020864 -
Ssu5g2350 561 SMART MACPF_8 122 319 IPR020864 -
Ssu5g2350 561 PANTHER OS02G0475300 PROTEIN 4 560 - -
Ssu5g2350 561 MobiDBLite consensus disorder prediction 529 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2350 Ssu-Chr5 66243467 66248188 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1837 9 55752195 55756588 Ssu5g2350 5 66243467 66248188 PCT