Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2216 ATGACAATCACTCATATTGTATACCTTCCCTTAGTTCATTTCTCATCTTCTTGTGACTCCTCTATGGCTAATTTGCACATGgaagataatgataataatgttCATATGACCTTCTTATTCCTTACATCAATATTCTTCTTCTTGACAGCATCCATTATTGCCCAAGAAAACACCAAATACGAAGAGTGTAGCAAGCCATACAGCTGCGGACAAGTGTCCCTATACTACCCTTTCTGGGGAGAGAGCAGACCCAGTTACTGTGGCAGCAACCGCCAATTCAAGCTCAACTGCGAGGCTAATCAAAACACCACCATCCAACTTGGCTCACAAAGTTTCCAAGTGCTTCACTTTGATCCATTGCGCTACACCATGACAATGGTTCGAACAGGCCTTGCCTATGATCATTGTTCCTCCTCGGCCTTAACCAACACTTCCTTGGACTCAAGTCTCTTCAATTACTTGCCAAATGTTAGAAACATCACCATCTTCTATGGTTGTCCTAGCTCCGTGACTTCAAATAGCACACACTTTTTTCCGTGCAAGGAAGGTGGCAACAAGGGTGCTTTCTATGGGGACCCCGAAACTAGAAAAGTCCAAGATTGTGAAGGAGCTAGGATTCAAGTGCAAGTAACAGAGGAACATGAGCCTGATGGCGGAATTCAAGGGCTGAACAAAGCCTTGAGTGAAGGGTTTGATGTGCATTTTATTTCAGAGGTTCAACTGTGCATAGGATGCGTTTTAACTTACGGAATATGTGGGACTAATGATGATGAGTCTCGGTTTTCATGCTTTTGCCCGGATGGAACTGAAGGCTTTGATTGTTCTCATCATCATACCGTTGCTGCTGCTGTGGTCAGTGCAATTGCAGTTGGCATTGCCTTTTATATCTATTATAGTcgtcaaaagaagaagaatcttcaTGCAGTAACATCATCTGTTCTATCTCAGGGAATCTCTTCTGGTCCTTCTTTTGAAGACCCTGAGAAGGCATGTAAATACTTTGGACTCCACTTCTTCTCCTATAGTGAACTTGAAGAGGCCACAAACTTCTTTGATCCTGCCAGAGAACTAGGAGACGGAGGGCTAAAGGATATAAGAAGTGATGGGGATTATAAAAGCAAGCATGAGGTGCTGGATATATCAGAAGATGCTGCCGCTTTGCTCAAGAATGAACCACCTCCTCCATCACCTGATTCAAATTTGGTGACCATCATATCAACACCACCAAATGGCCGTAGCCAGTAG 1245 0.4241 MTITHIVYLPLVHFSSSCDSSMANLHMEDNDNNVHMTFLFLTSIFFFLTASIIAQENTKYEECSKPYSCGQVSLYYPFWGESRPSYCGSNRQFKLNCEANQNTTIQLGSQSFQVLHFDPLRYTMTMVRTGLAYDHCSSSALTNTSLDSSLFNYLPNVRNITIFYGCPSSVTSNSTHFFPCKEGGNKGAFYGDPETRKVQDCEGARIQVQVTEEHEPDGGIQGLNKALSEGFDVHFISEVQLCIGCVLTYGICGTNDDESRFSCFCPDGTEGFDCSHHHTVAAAVVSAIAVGIAFYIYYSRQKKKNLHAVTSSVLSQGISSGPSFEDPEKACKYFGLHFFSYSELEEATNFFDPARELGDGGLKDIRSDGDYKSKHEVLDISEDAAALLKNEPPPPSPDSNLVTIISTPPNGRSQ 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2216 414 ProSitePatterns EGF-like domain signature 1. 263 274 IPR000742 -
Ssu5g2216 414 Pfam Wall-associated receptor kinase C-terminal 195 268 IPR032872 -
Ssu5g2216 414 Pfam Wall-associated receptor kinase galacturonan-binding 63 127 IPR025287 GO:0030247
Ssu5g2216 414 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 36 363 - -
Ssu5g2216 414 MobiDBLite consensus disorder prediction 400 414 - -
Ssu5g2216 414 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 36 363 IPR044652 -
Ssu5g2216 414 MobiDBLite consensus disorder prediction 387 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2216 Ssu-Chr5 63429052 63432921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2216 22 365 Receptor kinase-like Gene Family AT5G38260 21.429 1.15e-14 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2216 5 63429052 63432921 Ssu5g2216 5 63429052 63432921 ECH