Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2213 ATGATTGGAAGTAAAGATCGTTTTGCTGACTCAGAGGGTGAGAACTCCAGGAACAAGCTTTCAAGGCACAATTTTGAGGCTAAGAAGGAGTACCCAGATGAGAAAGGTGTTGAATTTCTGAGAGATTCAGAGGTGGGTGGTGTTGATATGGTTCTTCACTCAAAACCCACCAAGGTGGTTGTTGGCAGCAGCTCAGGGTTGCAAGAGTTGACCCTCAGCTACCTTTGTGACAACCCAAAACTGAGTCTTGCTGAGAAAGAGGCTCCTGGTAAAAGCTTGCTGAATTCCTTGGAGAAAATGAGCCACAAAGGGAAAGAAGTTGTGGTTTGTGAGAATTCAAATCAGGATAGAAAATGGGTGGAAAGAGATTTCCTCAGCTTGAGTGAGCCAAGAGAGGATTCTTCAAAGAGATCCCTTGAGGAAGTTGTTGAGAGGGAGAGTAGTAGGGAGAAGAAGCCAAAACTGGAGACACTTAATCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCCCTCACAGCTTCAAACGCTTTGCAGAATGGTGATCAACCAGTTAGGACTAAACCTTGCAGGCCATCCACTACTCACACTTCATATTCCAATGACTACACAGCAGCTTCTCTGTCTTACTCTTATTCCCACCCCTTCTCTCACAACCCAAGCTGTTCACTCACCCGCAATTCAACTGACAATTTTGAGTACTCAGTGAGCAAAGATGACCAAATTTGGAACTGCGGGGAGGGGACTAATGGCTCTGTGCATAGTAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGTCCAACCATGCTGCTGGTATTAGTTCCTTTATGCAAGGTAATAGTCAGTATAAAACTACTAGTTCAGATAATCATTCTTTTTTCCCTTCAGAGTTGCCTGCTAGGCCAAGGTTTGAGGCTCAGTCAGGGGACTCAAGGGGGAGGAATTCTGAGAATCTGAGAATCTTGGAAGGCTTGGATGATGGGAAGGTAAGGAAGCTTTCCAGACCAGAGAGAATTGTCAGGGAAATTGTTTCAGAGTCTATACCTATCATGGCATTGACAATTCAGGAGCTTACTGATGAAGTCATAGCATCAACTAAGGAATACTTGAAGAATCTCATTGAGAAGCCTGACAAGAAAGAGGAAGTGGTCAATCTCCAAAACCGGCTTGAGAGAAGATCTGACCTTACCAAGGAAGCTCTTTCAAAGTGCCATAAAGTGCAATTAGAGATTTTAGTGGCTGTCAAGATGGGGCTTGCTAGCTTCTTATCTAGCAAAGTTCACTTGTCTGAGATGGTAGAGATTTTCTTGTATAAGAGATGTAGGAATGTGACCTGCAAGCATTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGAAATAAGGGCTTTTGCAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAATAACACTTGTAGTTGGATTGGATGTGATGTGTGTTCCCATTGGTGCCATGCTACCTGTGGCCTTCAGAGGAATCTTATCAAGCCTGGGCCTAGCTTGAAGGGACTTTCAGGGACCTCAGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCCTCAGAAATGTTTGGTTTCGTTAAAGACGTGTTCGTGTGTTGTGCAAAGGATTGGGGTCTTGAAACCTTGATGAAAGAGCTTAACTGTGTAAGGAGGATCTTCAAGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAGCTGACGACATGCTGTTAAAGCTTCAAACTAAAATGATATCTCCTTTGGATGCCTGCAATTACATCTTACAATTTTTCAGCTATGCGGACAACATTGCAGACTTTCCTGCTTCTAGTATTTCTTCAAAGGATTTGGCAGCCTCTCAATCTACCCTCACAAAGGATACACCATCTCTTTCAAAACCTAATTCTCTATTACCAAAATATGCTTATGACTTGGGCTATCCTAGGTCACATCCTGATGCCATGTCAAATGATCTACTTCAGAAAGACCTCAAAGCTTCCATCTTAAGTGAACTGAAAAATGAGGCTGATTTCCATTTGGGGGCCTTATTAAGGAAAGGTGGACTTGAAAGTTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCAAGAAGAGAGGCAGAAGGATTCCAGAGGATGATCAGGACGAAGACTGCACAGATGGAAGAAGAGTACGCGGAAAAGCTTTCCAAACTCTGCTTGCACGAGACCGAGGAAACGCAGAGGAAGAAATTGGATGAACTGAAAGTCTTGGAAAATTCCTACTTTGATtactataaaatgaaaaagagaatgcAAGATGAGATTGATGGTTTGTTGCGGAGAATGGAGGCAACAAAGCAGCAatgggtttaa 2409 0.4292 MIGSKDRFADSEGENSRNKLSRHNFEAKKEYPDEKGVEFLRDSEVGGVDMVLHSKPTKVVVGSSSGLQELTLSYLCDNPKLSLAEKEAPGKSLLNSLEKMSHKGKEVVVCENSNQDRKWVERDFLSLSEPREDSSKRSLEEVVERESSREKKPKLETLNLSLALPDVSLSLTASNALQNGDQPVRTKPCRPSTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDNFEYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVALSNHAAGISSFMQGNSQYKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENLRILEGLDDGKVRKLSRPERIVREIVSESIPIMALTIQELTDEVIASTKEYLKNLIEKPDKKEEVVNLQNRLERRSDLTKEALSKCHKVQLEILVAVKMGLASFLSSKVHLSEMVEIFLYKRCRNVTCKHLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCANNTCSWIGCDVCSHWCHATCGLQRNLIKPGPSLKGLSGTSEMQFHCIGCGHASEMFGFVKDVFVCCAKDWGLETLMKELNCVRRIFKGSEDRKGKELHVKADDMLLKLQTKMISPLDACNYILQFFSYADNIADFPASSISSKDLAASQSTLTKDTPSLSKPNSLLPKYAYDLGYPRSHPDAMSNDLLQKDLKASILSELKNEADFHLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQRMIRTKTAQMEEEYAEKLSKLCLHETEETQRKKLDELKVLENSYFDYYKMKKRMQDEIDGLLRRMEATKQQWV 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2213 802 MobiDBLite consensus disorder prediction 130 152 - -
Ssu5g2213 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 550 569 IPR004082 -
Ssu5g2213 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 737 759 IPR004082 -
Ssu5g2213 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 431 452 IPR004082 -
Ssu5g2213 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 698 718 IPR004082 -
Ssu5g2213 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 353 375 IPR004082 -
Ssu5g2213 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 392 407 IPR004082 -
Ssu5g2213 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 477 497 IPR004082 -
Ssu5g2213 802 PANTHER PROTEIN OBERON 3 1 802 - -
Ssu5g2213 802 Pfam PHD - plant homeodomain finger protein 440 564 IPR032881 -
Ssu5g2213 802 MobiDBLite consensus disorder prediction 1 27 - -
Ssu5g2213 802 CDD PHD_OBE1_like 470 529 - -
Ssu5g2213 802 Coils Coil 704 738 - -
Ssu5g2213 802 Coils Coil 752 772 - -
Ssu5g2213 802 Coils Coil 780 800 - -
Ssu5g2213 802 MobiDBLite consensus disorder prediction 178 197 - -
Ssu5g2213 802 Pfam Coiled-coil region of Oberon 663 791 IPR032535 -
Ssu5g2213 802 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 802 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2213 Ssu-Chr5 63360940 63365062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2213 440 537 PHD Gene Family AT5G57380 30.612 3.61e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2213 5 63360940 63365062 Ssu5g2213 5 63360940 63365062 ECH