Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2211 ATGGGGGGGTCTCACATGGGGTTGCTCTTCTTTTGTTCCATGCTTTTTGCCTTGGCTTCTGGCTCATCCAGAAACTTGCCCATCACACCCTTTGATGAAGGGTACGCACCCTTGTTTGGGGACAGTAACTTGGTCATCCATAGGGATGGGAAATCGGTTCATCTTAAACTGGATGAGAGAacagGTGCCGGATTTGTGTCCCATGATCTTTACCTTCACGGGTATTTCAGCGCGTCCATTAAGTTGCCTTCTGATTACACTGCAGGAGTTGTGGTTGCCTTCTATATGTCAAATGGTGACATGTTCCGGAATAACCATGATGAAATCGACTTTGAGTTTTTGGGAAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGCAATGGTAGCACCAGCATTGGCAGAGAGGAAAGATATGGTCTCTGGTTTGACCCTACGGATGATTTCCATCAGTACACTGTTGTCTGGACAGATTCTCGGATCATATTTTTTGTGGATAATGTTCCTATCAGAGAAGTCACGCGAACAGAATCTATGGGAGGAGATTTCCCCTCTAAGCCGATGACTTTGTACGCAACAATATGGGATGCATCTGATTGGGCTACCAATGGAGGCAAATACAGGGTTAACTACAAGTATGCACCGTATGTTGCTGAATTCTCTGACCTTGTCCTGCACGGTTGTGCAGTGGATCCAATTGAGCACGTGGCCAAGTGTGACAATGCTCAAAGCTCTGAGGCAATTCCTTCTGGTGTTACACCAACAGAAAGAATCAAAATGGAGAATTTCAGGAAGAAGCACATGACCTACTCCTACTGTTATGACAGAGTCAGATACAGAGTCCCTCCCTCGGAGTGTGTGATCAATTCCCAGGAAGCCGAGAGGCTGAGAAACTTTGATCCTGTCACGTTTGGTAGTGGCCGGCGTCACCATGGAAAACGACACCGTCGCAGCAGAGGAAGCCAGACGGAAGCTGCTTCATTTTAA 996 0.4649 MGGSHMGLLFFCSMLFALASGSSRNLPITPFDEGYAPLFGDSNLVIHRDGKSVHLKLDERTGAGFVSHDLYLHGYFSASIKLPSDYTAGVVVAFYMSNGDMFRNNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTSIGREERYGLWFDPTDDFHQYTVVWTDSRIIFFVDNVPIREVTRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPIEHVAKCDNAQSSEAIPSGVTPTERIKMENFRKKHMTYSYCYDRVRYRVPPSECVINSQEAERLRNFDPVTFGSGRRHHGKRHRRSRGSQTEAASF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2211 331 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 292 IPR013320 -
Ssu5g2211 331 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 223 IPR000757 GO:0004553|GO:0005975
Ssu5g2211 331 MobiDBLite consensus disorder prediction 302 331 - -
Ssu5g2211 331 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 310 IPR044791 GO:0004553
Ssu5g2211 331 Pfam Glycosyl hydrolases family 16 35 215 IPR000757 GO:0004553|GO:0005975
Ssu5g2211 331 CDD GH16_XET 29 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu5g2211 331 PIRSF EndGlu_transf 3 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu5g2211 331 Gene3D - 17 289 - -
Ssu5g2211 331 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 253 289 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Ssu5g2211 331 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 7 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2211 Ssu-Chr5 63311163 63313358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2211 8 328 Glycoside Hydrolase AT2G01850 68.405 2.44e-166 464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2211 5 63311163 63313358 Ssu5g2211 5 63311163 63313358 ECH