Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2209 ATGGCAATGCCATCGGGAAATGTGGTAATACAAGACAAAATGCAGTTTCCAAGTGGGGGTGGGGGTGTTGCTGGCGGCGAGATCCAGCAGCACCACTACCGCCAGCAATGGTTTGTTGATGAGAGGGATGGACTCATTGGTTGGCTGCGAAGCGAATTCGCAGCTGCCAATGCGATCATAGACTCCCTTTGTCACCATTTGCGTGTGGTTGGCGACCCTGGGGAGTATGACATGGTCATTGGGGCCATTCAGCAGAGGAGGTGTAATTGGAATCAGGTGCTGCTTATGCAGCAATACTTTTCTGTGGCTGAAGTGGGGTATGCGCTGCAGCAAGTGGCGTGGAGGAGGCAGCAGAGGCCATTGGATCCGGTGAAAGTGGGTGCAAAGGAGGTTAGGAAATCCGGTTCCGGGTACCGGCATGGGCAGAGGTTTGAGCCTGCAAAGGAAGGTTATAATTCTAGTGTAGAGTCTTATAGTCATGATGCAAATGCTGTGGTTACCGGAGCCGCGGAGAAAGGGACTCCAATTATTGAGAAGAGCGAAGAACATAAATCTGGTGGCAAGGTTGAGAAAGTGGGGGATAAGGGTTTAGCATCTGCTGAAGAGAAGAAAGATGCTATAACAAAGCATCAAACTGATGGCAATTTGAAGAGCACAGGGAGTTCTGAGGGATCTCTGTCTAACTTAGAATCTGAAGCTGCTGTTGTAAATGATGGATGTATATCTAATTCTAAAGGGAATGATTCACATTCTATGCAAAATCAACATCAGAGCCAAAGTCTTGCTACCATAGCAAAGACTTTTATTGGCAATGAAATGTTAGATGGGAAGACAgtGAATGTGGTTGATGGATTGAAGTTGTATGAAGATTTATTTGATAGCACTGAAGTTTCAAAACTTGTTTCATTGGTCAATGATCTCAGGGTTTCTGGAAAAAAAGGACACTTACAAGGAAGTCAGGCATATGTAGTTTCAAGAAGGCCCATGAAAGGGCATGGAAGGGAGATGATTCAGTTGGGTGTTCCGATTGCTGATGCCCCGGCAGATGGGGAAAATATGACAGGAGCCTCCAAAGGCATGTCCCTTCTGGCTATGCAAGGGAAATCTGCTGATTTTGCTAAGCATGCTCTTCCTTCCGTACGCAAACAACGCATACTTGTTACCTTCACAAAGTCCCAACCAAAAAAGTCCCTACCAAGTGACACACAACGTCTTGCCTTGACGGCAGCATCTTCTCACTGGGGTCCACTGCCAAGCCGATCTCCCAGTCATGTTCGTCATCACGTAGGCTCCAAGCATTATGCTACACTTCCAACAACTGGAGTACTGCCAGCTCCTCCCATTCGACCACAAATGCCAGCTCCGGTTGGCATGCAACCGATGTTTGTTGCTGCTTCAGTTGTGCCTCCCATGCCGTTTCCTGCAGCTGTGCCAATCCCACCCGGTTCTACTGGATGGACAGCAGCTCCTCCCCCGAGGCATCCCCCTCCTCGAATCCCTGCTCCTGGCACTGGAGTCTTCCTACCTCCACCTGGCTCAGGTAATTCATCTCAACAGTTGCCAGCGGGTACTTTGACTGAAGTGAACCCAACAATGGAAACTCCAACCATGCTGGAGAAAGAAAATGGTAAAACTAATCATAATGGTACAAGTGcttcaccaaaagaaaaagtgcAAAAGCAAGAATGCAATGGGCATGCTGATGGAACTCAAGTTGAACCAGCTCTAGAGACACGGCAGGATAGCAATGACAAAGCTGCAACAAGCCATTGA 1773 0.4749 MAMPSGNVVIQDKMQFPSGGGGVAGGEIQQHHYRQQWFVDERDGLIGWLRSEFAAANAIIDSLCHHLRVVGDPGEYDMVIGAIQQRRCNWNQVLLMQQYFSVAEVGYALQQVAWRRQQRPLDPVKVGAKEVRKSGSGYRHGQRFEPAKEGYNSSVESYSHDANAVVTGAAEKGTPIIEKSEEHKSGGKVEKVGDKGLASAEEKKDAITKHQTDGNLKSTGSSEGSLSNLESEAAVVNDGCISNSKGNDSHSMQNQHQSQSLATIAKTFIGNEMLDGKTVNVVDGLKLYEDLFDSTEVSKLVSLVNDLRVSGKKGHLQGSQAYVVSRRPMKGHGREMIQLGVPIADAPADGENMTGASKGMSLLAMQGKSADFAKHALPSVRKQRILVTFTKSQPKKSLPSDTQRLALTAASSHWGPLPSRSPSHVRHHVGSKHYATLPTTGVLPAPPIRPQMPAPVGMQPMFVAASVVPPMPFPAAVPIPPGSTGWTAAPPPRHPPPRIPAPGTGVFLPPPGSGNSSQQLPAGTLTEVNPTMETPTMLEKENGKTNHNGTSASPKEKVQKQECNGHADGTQVEPALETRQDSNDKAATSH 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2209 590 MobiDBLite consensus disorder prediction 197 228 - -
Ssu5g2209 590 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 361 575 IPR044842 GO:0003729|GO:0006402|GO:0032451
Ssu5g2209 590 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 1 358 IPR044842 GO:0003729|GO:0006402|GO:0032451
Ssu5g2209 590 MobiDBLite consensus disorder prediction 212 228 - -
Ssu5g2209 590 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 361 575 - -
Ssu5g2209 590 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 358 - -
Ssu5g2209 590 MobiDBLite consensus disorder prediction 537 590 - -
Ssu5g2209 590 MobiDBLite consensus disorder prediction 537 558 - -
Ssu5g2209 590 MobiDBLite consensus disorder prediction 484 507 - -
Ssu5g2209 590 MobiDBLite consensus disorder prediction 484 523 - -
Ssu5g2209 590 MobiDBLite consensus disorder prediction 197 211 - -
Ssu5g2209 590 Gene3D - 269 360 IPR037151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2209 Ssu-Chr5 63274799 63280651 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2209 5 63274799 63280651 Ssu5g2209 5 63274799 63280651 ECH