Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2200 ATGTGGCCTACATTAGTGGCTAATAAGATATTCAAGAAGCGCCTAGGAAGCAGCAATTTTATAGCAGATTATCCAAGATATAAGGAACCCTTGCTGGGTATTGTAGACATTGATCAGAACTCAAAAACCATTCTTAATGATCACAAGGACAAGCATAAATACAAGGTATTTGTTAGTACATGGAACGTAGGTGGGATTGCACCGGATGAAGATTTGAAGATAGATGATTTGTTGGAGACATGCAACGACTCTTGTGACATCTATATACTTGGGTTTCAAGAAATAGTGCCTCTTAAAGCATCAAATGTATTGGGATCTGAAAATAATGAGATTTCTATGAAATGGAATTCCATAATCAGGGAAGTACTGAACAAGAATATTTGTCCcaataagaaagaaaatccAGCTAAGTACTGTGAAGCCCCACATGATTTCCAATGTATCATTGGCAAGCAAATGGTTGGAATATTCTTATCCGTGTGGACTAGGAGAGATCTTTGTCCATTCATTCGGCATCCAAGCGTGTCATGTGTAGGCTGTGGCATAATGGGCTGCTTAGGAAACAAGGGTTCTGTATCAGTGAGATTTCAGTTACATGAAACAAGCTTCTGCTTTGTGTGCGGCCATCTAGCGTCAGGGGGCAGAGAAGGGGATGAGAAGTACAGGAACTCCAATGTTGCTGAAATTTTTTCCCGGACAAGCTTTCCTAGAGGCCCTTTGCTTGATTTGCCAAGAACGATTCTTGATCACGATCATGTAATATTGCTTGGAGATTTAAATTACAGAATTTCTCTACCAGAAGAAACGACACGCTTGCTTGTTGAAAAAAGAGACTGGGATTCCTTATTAGAAAATGATCAGCTAATAATGGAGCTAATGACGGGAAACAAGTTAAGAGGATGGCAAGAAGGAGCAATTAAATTTGCTCCTACCTACAAATATTGTCCAAATTCAGACATTTACTATGGATGTTGTTATCACGGGAAAAAGGCAGAAAAGAGAAGAGCACCAGCATGGTGTGATCGAATAGTATGGTACGGCGAGGGTTTAAAGCAACTTCAGTACACTAGAATTGAATCACAACTATCAGATCACAGGCCTGTTAAGGCAATGTTTACAGCAGAAGTCAGGGTTTTATCCGAGCTGAAAAACTTGCAAAGCTTGTTCCTATCAGAAAGATTCGAACAAATTAAAACTCCCTTTGAAGTTTCCACCACTGATGATTTTGTACGTACAAAACGATCAAGCTTCCGGTTGTGA 1260 0.3929 MWPTLVANKIFKKRLGSSNFIADYPRYKEPLLGIVDIDQNSKTILNDHKDKHKYKVFVSTWNVGGIAPDEDLKIDDLLETCNDSCDIYILGFQEIVPLKASNVLGSENNEISMKWNSIIREVLNKNICPNKKENPAKYCEAPHDFQCIIGKQMVGIFLSVWTRRDLCPFIRHPSVSCVGCGIMGCLGNKGSVSVRFQLHETSFCFVCGHLASGGREGDEKYRNSNVAEIFSRTSFPRGPLLDLPRTILDHDHVILLGDLNYRISLPEETTRLLVEKRDWDSLLENDQLIMELMTGNKLRGWQEGAIKFAPTYKYCPNSDIYYGCCYHGKKAEKRRAPAWCDRIVWYGEGLKQLQYTRIESQLSDHRPVKAMFTAEVRVLSELKNLQSLFLSERFEQIKTPFEVSTTDDFVRTKRSSFRL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2200 419 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 5 397 - -
Ssu5g2200 419 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 5 397 IPR045849 GO:0004445|GO:0046855
Ssu5g2200 419 Gene3D Endonuclease/exonuclease/phosphatase 36 399 IPR036691 -
Ssu5g2200 419 SMART i5p_5 52 380 IPR000300 GO:0016791|GO:0046856
Ssu5g2200 419 Pfam Endonuclease/Exonuclease/phosphatase family 60 365 IPR005135 GO:0003824
Ssu5g2200 419 SUPERFAMILY DNase I-like 53 378 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2200 Ssu-Chr5 63119630 63122898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2200 55 381 Acyl Lipid Metabolism Gene Families AT1G65580 28.457 1.05e-33 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2200 5 63119630 63122898 Ssu5g2200 5 63119630 63122898 ECH