Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2188 atgAGGGTGTGGGAAAGAGCCAGTGGAGCCATCAAGGACAAGAACAGCATATGGGTTGCAAAGTACACACGAAAGGGTCCATTCCACAACCCTGATTTAGAAACCGTGATAATCAAGGCCACGAGCCATGATGATGACAGCATAGATAGCAAGAACGTGCAGAGAGTGTTCCAATGGATACGCACCTCGCCCTTGTACCTGAAACCTCTTGTATGGGCTCTCTCCATGCGCATGCAAAAGACTCGAAGCTGGGTTGTGGCGCTTAAAGGCTTGATGCTCATCCATGGCGTTTTCTGCTGTGACATCCCCGCGGTGCAACGCATGGGGAGGTTACCCTTTGACTTATCAAACTTCTCTGATGGCCATTTGAACGCCGCAAAGGCTTGGGGATTCAACGCTTTCGTTCGTGGCTATTTCGCGTATTTGGACCAAAGGTCAGCGTTTGTGTCCTCCGAGGTTAAGAGGGTGAAGGATAACAAgaaggaggtggaggtggaggagaCGTTGATGGAAGTGCTTGAGAAGTTGCAAAAGTTGCAAGGAATGATTGACATGCTTCTTCAGATCAGGCCCCGGAATGAGAACATGAACGTTGGTTTGGTTCTGGAAGCTATGGATTGTGTTGTTGTTGAGGTATTTggtatgtatagtaagttttgCAACAAGATTGCGAAGGTTTTGTCGAGGATATATGAGATAGGTGGGAGGGTTGAAGCGAGTATTGGCCTCAAGGTTCTGCAGAAAGCATCGATTCAAAGGGAGGAGTTGTCTTTGTTCTTTGAGTATTGTCAGGAAATTGGGGTCCTCAATGCCTCTAAGTGCCCCAAGATTGAAAGAATTTCTGAGGAGGATATTCGGGATCTTGAGAGGATAATTAGTGGTGCCTCTGCCAAGAAGGGTGGCGAATGGTTTGATGAAGACAAGGCCATTGTGGTGAGAGATTGTTCTGCCACTGCAACGGTTTCGCACCAGAAGGAGTCGAAGAATGGTTTGATGACCGTGATCACACACCAATGGGTGGTGTTTGATGATGATGTAATGGTTGGTGCTAAAGGAATGCATAACATCTCTAATGGTGCAAAGGCTATTGGCAGGACAACCAACCCTTTTGAGGAATCATATAGCCTCGTGCCTCATGTTCCTGTTCACACTCAAGCTCTTCCTGATCTAATTAGTTTGTAG 1182 0.4526 MRVWERASGAIKDKNSIWVAKYTRKGPFHNPDLETVIIKATSHDDDSIDSKNVQRVFQWIRTSPLYLKPLVWALSMRMQKTRSWVVALKGLMLIHGVFCCDIPAVQRMGRLPFDLSNFSDGHLNAAKAWGFNAFVRGYFAYLDQRSAFVSSEVKRVKDNKKEVEVEETLMEVLEKLQKLQGMIDMLLQIRPRNENMNVGLVLEAMDCVVVEVFGMYSKFCNKIAKVLSRIYEIGGRVEASIGLKVLQKASIQREELSLFFEYCQEIGVLNASKCPKIERISEEDIRDLERIISGASAKKGGEWFDEDKAIVVRDCSATATVSHQKESKNGLMTVITHQWVVFDDDVMVGAKGMHNISNGAKAIGRTTNPFEESYSLVPHVPVHTQALPDLISL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2188 393 Pfam ANTH domain 32 292 IPR011417 GO:0005543
Ssu5g2188 393 Gene3D - 4 152 IPR008942 -
Ssu5g2188 393 CDD ANTH_N_AP180_plant 33 148 - -
Ssu5g2188 393 SUPERFAMILY GAT-like domain 171 293 - -
Ssu5g2188 393 SUPERFAMILY ENTH/VHS domain 32 149 IPR008942 -
Ssu5g2188 393 Gene3D ANTH domain 153 303 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Ssu5g2188 393 ProSiteProfiles ENTH domain profile. 25 156 IPR013809 -
Ssu5g2188 393 PANTHER OS08G0467300 PROTEIN 1 392 - -
Ssu5g2188 393 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 392 IPR045192 GO:0048268|GO:0072583
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2188 Ssu-Chr5 62861939 62863120 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2188 5 62861939 62863120 Ssu5g2188 5 62861939 62863120 ECH