Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2187 ATGATCCTttgttttttgttgtttgtagTTGTTATGGATGATGATGTGTTAAACATGCCCAATTGGGGTTATTATGAACCCTTCAGAGGGGGACATCTTGGTCTGCAGCTTATGCCTGGTGTGACTGATCGAGACACAAAGTCATTTTTGCCTGGTCGTGATCCAGCTATGTTAATGGGTGCAAATGGAACTTTTCACCCTCGAGATTGCGTTGTTTCCGAAGCACCACTTCCATTGAACTATGTCAGAGATAATTGGATAAGCCAGAGGGATAGGTTTTTTAATATGCAGCCCACAAATCCTAATTATGCTGTTCTTCCAGAGACATCAGCAGCTCCCTCCTTGCAAATTATACAGCCACCTGACACATCGAGAGATGAGAAAGTGGatagagttgaggagttagttGTCAAAAAGGAAGGTGGCCAGTCAAAGAAAAGGCAAACTAGGGGTGCTCTCACAGTTCCAAAAGCTAAGAAACCTAGGAAGCCGAAGGATAATAGCAATGCTCCGGTTCAACGTGTGAAGCCACCGAAGAAGACTATGGAGCTTGTAATTAATGGAATTGATATGGACATTTCTGGTCTACCCATTCCAGTTTGTTCATGTACTGGGGCTCCTCAGCAGTGTTATCGTTGGGGCTGCGGAGGTTGGCAATCGGCTTGTTGCACCACAAATGTGTCTATATATCCTTTGCCAATGAGCATGAAAAGGCGTGGTGCAAGGATAGCTGGGAGGAAAATGAGCCAAGGtgcttttaaaaaggttttagaGAAACTTGCAGCTGAAGGTTATAATTTTGCTAACCCTATTGATCTGAAGACTCATTGGGCTAGACATGGCACCAACAAGTTTGTCACTATCAGGTAG 870 0.4184 MILCFLLFVVVMDDDVLNMPNWGYYEPFRGGHLGLQLMPGVTDRDTKSFLPGRDPAMLMGANGTFHPRDCVVSEAPLPLNYVRDNWISQRDRFFNMQPTNPNYAVLPETSAAPSLQIIQPPDTSRDEKVDRVEELVVKKEGGQSKKRQTRGALTVPKAKKPRKPKDNSNAPVQRVKPPKKTMELVINGIDMDISGLPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2187 289 PANTHER PROTEIN BASIC PENTACYSTEINE2-LIKE 12 289 - -
Ssu5g2187 289 SMART GAGA_bind_2 12 289 IPR010409 -
Ssu5g2187 289 MobiDBLite consensus disorder prediction 138 176 - -
Ssu5g2187 289 PANTHER - 12 289 IPR010409 -
Ssu5g2187 289 Pfam GAGA binding protein-like family 12 289 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2187 Ssu-Chr5 62847083 62847952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2187 12 289 BBR or BPC Transcription factor family AT2G01930 57.718 4.04e-108 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Ssu5g2187 GAGA_bind 1.5e-106 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2187 5 62847083 62847952 Ssu5g2187 5 62847083 62847952 ECH