Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1901 ATGGCAAAGCATAAGGAATTTGTTCTGTACTCTCTCCTGCTGTCCTTCATTATCATTCCCATGGCCAGTGCCCTGAGAAGCATCACTCCGGgccaatccatccattacaaCGAGACCCTGGTTTCAGTATCTGGAATTTTTGAAGCTGGGTTCTTCAGCTTAGGGAATTCACAGAGCCAATATTTTTGCATATGGTACAAGCGTCTAACACCTAGGACAATTGTATGGGTAGCCAACAGAGACACCCCAGTTGATAACTCCACAGCAATGTTCAAAATCACTGATACAGGAAATCCAGTTATAGTTGATGGCTCAGGGACCACACTCTGGTCCTCCAATGCATCAAAAACTGCACAGAAGCCTGTTTTGTTGCTCCAAGACGCAGGAAACCTTGTTGTAGGAAATGGTGGGAACATTGTGTGGCAAAGCTTTGATTACCCTGGTGACACTTTACTCCCTGGTATGGTACTTCAAAGTAATAGAGTTAGTGGTGAGCATAATTCTATGACATCTTGGAGAAACTCTGAAGATCCTGGAAGAGGTGAattttcatatcatttggaTGGTCAAGGTTATCCTCAACTTGTTATCACAAAGGGATCAACATTAGTATACAGACTAGGCTCATGGAATGGTTTTTTCTTCAGTGGGATTCCTTGGGAAACACTATACAATTACTTCAGTTTCTCTTTTGAGTTAACTGAGAAGGAAATTCAGTTTAAATACGAGCCCTTGGATGCTTCAACTGTTTCAAGATACATGATCACTCCCACAGGTAGTGTGCAACGTTTTTTGTGGTCATATCAGACAGAAACTTGGCAACTTTTCCAGGCTGGTCCTGGGGACCAGTGTGAAAACTATGCCTTGTGTGGTGCTAATTCTGATTGCAGTGTTAATAACTCTCCAATATGTGAGTGCCTACCAGGTTTCACACCCAAATCTCCAGAAAACTGGAGTTTGTCAAATTGGACTGATGGGTGTGTCTGGAAGGTGAATTTGGATTGTGATAATAGAGATGGATTTGTTAAGCTCACAGGAATGAAGCGGCCAGACACGTCTTCCTCGTGGTTTGATAAGAACATGGATATTCAGGAATGTGAGGATCAATGCTTGAAAAACTGCAGTTGCATAGCatattcaagtttaaatattagTGACGGTGGAAGTGGCTGCCTGATTTGGTTTAATAAGATCACAGACATGAGGAAAGATACTTCTATAGGGCAAGAGATTTACCTAAAGGTGCCTGCTTCTGAATTAGGTCACTCAACAGATaatgcaaagaagaaaaagctAGCAGGGATTCTGGTAGGAATTGGGATACTCATATTGGGCATCACAATAGTTGGATATGTCATCTATCTGAAGAGTAAGAAACTTGGGAAGTCAGGTAAGGACAAAATAATTAACGAGGAGGACCAGATTGAGAAATATGAGAAGGAAAGCATTGAGTTACCAACATTTGAGTTTTCAACCATTGCTAATGCCACAGATCACTTCTCCCCCAATAACATATTGGGAGAAGGTGGATACGGCCCAGTTTATAAGGGTGTACTAGCAAATGGGAGAGAAATTGCCATTAAGAGACTTTCTTTGAAATCTGGACAAGGACCAAAGGAATTCAAAAATGAAGTTTTGTTAATTGCCAATCTTCAACATCGAAATCTTGTGAAACTTGTGGGTTGTTGCATTGAGAATGAAGAAAGAATCCTAATCTATGAATACATGCCTAACAGAAGTTTGGACAACATTATTTTTGATCAAACTGGAAGCAAAGTATTGGATTGGAATAAACGTTTACATATTATTAGCGGGATTGCTCGAGGGCTTGTCTATCTTCATGAAGATTCTAGACTAAGGATCATCCACAGAGATTTAAAAACCAGCAATATTCTTCTTGACAATGATATGAACCCCAAAATATCTGACTTTGGACTGGCCAGAGCTTTTGGTGGTGATCATTCGGAGGCCAATACAATAAGAGTAGTGGGAACTCATGGGTACATGCCCCCGGAGTATGCAGTATATGGGACTTTTTCTGTAAAGTCTGATGTCTTCAGCTTTGGTGTTATTGTACTAGAGATGGTTAGTAGGAGGAAGAACAGAGAATTTTCTGACCCAGATCACAATCTTAACCTTCTTGGACATGCATGGAGACTGTGGAGTGAGGATAGACCATTGGAGCTGATAGATGACTCCCTTAGCGATTCCGTTATTGCAGCTGAGGCATTAAGATGTATTCACATAGGGCTCTTGTGTGTGCAAGAGAGACCAGATGATAGGCCAGACATGTCATCTGTTGTTCTAATGTTGAATGGAGAGAGAGCATTGCCTAATCCAAAACAACCCGCGTTTTATCCACATGAAGTTTCATCAAGCAAAAATGAACAGTCTTCAACAAATGAACTTTCCATTTCATTGTTACAGGCAAGATAG 2436 0.3998 MAKHKEFVLYSLLLSFIIIPMASALRSITPGQSIHYNETLVSVSGIFEAGFFSLGNSQSQYFCIWYKRLTPRTIVWVANRDTPVDNSTAMFKITDTGNPVIVDGSGTTLWSSNASKTAQKPVLLLQDAGNLVVGNGGNIVWQSFDYPGDTLLPGMVLQSNRVSGEHNSMTSWRNSEDPGRGEFSYHLDGQGYPQLVITKGSTLVYRLGSWNGFFFSGIPWETLYNYFSFSFELTEKEIQFKYEPLDASTVSRYMITPTGSVQRFLWSYQTETWQLFQAGPGDQCENYALCGANSDCSVNNSPICECLPGFTPKSPENWSLSNWTDGCVWKVNLDCDNRDGFVKLTGMKRPDTSSSWFDKNMDIQECEDQCLKNCSCIAYSSLNISDGGSGCLIWFNKITDMRKDTSIGQEIYLKVPASELGHSTDNAKKKKLAGILVGIGILILGITIVGYVIYLKSKKLGKSGKDKIINEEDQIEKYEKESIELPTFEFSTIANATDHFSPNNILGEGGYGPVYKGVLANGREIAIKRLSLKSGQGPKEFKNEVLLIANLQHRNLVKLVGCCIENEERILIYEYMPNRSLDNIIFDQTGSKVLDWNKRLHIISGIARGLVYLHEDSRLRIIHRDLKTSNILLDNDMNPKISDFGLARAFGGDHSEANTIRVVGTHGYMPPEYAVYGTFSVKSDVFSFGVIVLEMVSRRKNREFSDPDHNLNLLGHAWRLWSEDRPLELIDDSLSDSVIAAEALRCIHIGLLCVQERPDDRPDMSSVVLMLNGERALPNPKQPAFYPHEVSSSKNEQSSTNELSISLLQAR 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1901 811 SUPERFAMILY Protein kinase-like (PK-like) 482 771 IPR011009 -
Ssu3g1901 811 Gene3D Transferase(Phosphotransferase) domain 1 576 782 - -
Ssu3g1901 811 PIRSF SRK 2 811 IPR024171 GO:0004674
Ssu3g1901 811 Gene3D Phosphorylase Kinase; domain 1 473 575 - -
Ssu3g1901 811 ProSiteProfiles PAN/Apple domain profile. 335 416 IPR003609 -
Ssu3g1901 811 MobiDBLite consensus disorder prediction 779 803 - -
Ssu3g1901 811 Pfam PAN-like domain 335 401 IPR003609 -
Ssu3g1901 811 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 811 - -
Ssu3g1901 811 SMART ntp_6 336 415 IPR003609 -
Ssu3g1901 811 SMART blect_4 31 147 IPR001480 -
Ssu3g1901 811 Pfam Protein kinase domain 503 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1901 811 CDD PAN_AP_plant 331 416 - -
Ssu3g1901 811 CDD B_lectin 37 147 IPR001480 -
Ssu3g1901 811 MobiDBLite consensus disorder prediction 786 803 - -
Ssu3g1901 811 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Ssu3g1901 811 ProSiteProfiles Protein kinase domain profile. 500 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1901 811 SMART serkin_6 500 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1901 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 178 IPR036426 -
Ssu3g1901 811 Pfam D-mannose binding lectin 73 173 IPR001480 -
Ssu3g1901 811 ProSiteProfiles EGF-like domain profile. 280 316 IPR000742 -
Ssu3g1901 811 Gene3D Hepatocyte Growth Factor 332 412 - -
Ssu3g1901 811 Gene3D - 21 144 IPR036426 -
Ssu3g1901 811 CDD STKc_IRAK 506 773 - -
Ssu3g1901 811 Pfam S-locus glycoprotein domain 205 314 IPR000858 GO:0048544
Ssu3g1901 811 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 811 - -
Ssu3g1901 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1901 Ssu-Chr3 59696705 59700110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1901 446 802 Receptor kinase-like Gene Family AT4G23150 52.355 5.36e-123 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1901 Pkinase 3.4e-45 CL0016