Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1705 ATGCTCCGAATCCCCAAATTCTTCGCCGTCAACGTCCGTCACCCTAATTTCCCTCCCCTTCTCTCCGTTTCCGTCGCCGCGTCTCCTCCTCCGTCACGGAACCGAAACCCACTGCTCCAGATGGCGCCTCGCGATTCGATGATGGCGGAGTACGCGAAATCGGGCCGGTCATCGTGCAAGGGGTGCTCCAAAGCCATCGAAGCCAAGGCCCTGAGGTTGGGTTTGGTCTCCAAGGGCAAGGGTCCTTACGACGAAGTCAAATGGCACCACCTCCGTTGCGTCCCTCTACACTCTCATTCCCACTCCTCTCCTGAGGCCATTAAAGGCTTTTTATCCTTGAAGaGTAGTGACCAGGAAGCTTTGAAGAAGTTATTTGCTGAAAATGAAAAGTCTGAAGAGGTTCATAAAGCAAAGGAAGACATACAAAATGAACTGCAAGAGACTGAAGAACGTGGTTcgaagaaaagaaagTTGTGCACACCTGATGCTGAAGCTGTGGTGAACATTAAATTTTCAGTTTCTGATGTCAAGAGCAAGTACAAGGATGCCAACCTTTTACCAAAATGGAAGGCATTCCAAACAGTCATATTTCTTGAACGGGATGACGGTCTGCATGATTCAAGTAAAATTGCTGCATTTGATTTTGATGGATGTCTTGCCAAAACAGCGGTGAATAGAGTGGGTGCAGATGCTTGGTCCCTCATGTATTCGTCAATTCCTGATAAACTACAAAGCCTATACAACGATGGCTACAAGTTGGTAATTTTTACCAATGAATCCAATATTGAACGTTGGAAGAATAAGAGGCAAGTAGCTGTGGACTCAAAAATTGGACgtctaaataattttattgagaaaGTAAAGGTTCCAGTTCagGTTTTTATAGCTTGTGGGGTAGGTAAATCAGGTAAAGCAGACAAAAAGGAAGATGATCCTTTTCGCAAACCCAAACCAGGGATGTGGCATCTTATGGAGCAACACTTCAACTCTGGCATTGCCATTGATATGGATcaATCCTTTTATGTTGGTGATGCAGCCGGGAGAGAATCAGATCACAGTGATGCTGATATTAAATTTGCAGAGGCCattggtttaaaattttatgtccCTGAAGAGTACTTCGCCTGA 1128 0.4353 MLRIPKFFAVNVRHPNFPPLLSVSVAASPPPSRNRNPLLQMAPRDSMMAEYAKSGRSSCKGCSKAIEAKALRLGLVSKGKGPYDEVKWHHLRCVPLHSHSHSSPEAIKGFLSLKSSDQEALKKLFAENEKSEEVHKAKEDIQNELQETEERGSKKRKLCTPDAEAVVNIKFSVSDVKSKYKDANLLPKWKAFQTVIFLERDDGLHDSSKIAAFDFDGCLAKTAVNRVGADAWSLMYSSIPDKLQSLYNDGYKLVIFTNESNIERWKNKRQVAVDSKIGRLNNFIEKVKVPVQVFIACGVGKSGKADKKEDDPFRKPKPGMWHLMEQHFNSGIAIDMDQSFYVGDAAGRESDHSDADIKFAEAIGLKFYVPEEYFA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1705 375 SMART zf_PARP_3 50 126 IPR001510 GO:0003677|GO:0008270
Ssu3g1705 375 Gene3D - 187 375 IPR023214 -
Ssu3g1705 375 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 45 374 - -
Ssu3g1705 375 TIGRFAM HAD-SF-IIIA: HAD hydrolase, family IIIA 209 367 IPR006549 -
Ssu3g1705 375 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 47 129 IPR001510 GO:0003677|GO:0008270
Ssu3g1705 375 TIGRFAM DNA-3'-Pase: DNA 3'-phosphatase 197 374 IPR006551 -
Ssu3g1705 375 Gene3D - 42 149 IPR036957 GO:0003677|GO:0008270
Ssu3g1705 375 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 50 124 IPR001510 GO:0003677|GO:0008270
Ssu3g1705 375 CDD HAD_PNP 209 374 - -
Ssu3g1705 375 Pfam Polynucleotide kinase 3 phosphatase 209 374 IPR013954 -
Ssu3g1705 375 SUPERFAMILY HAD-like 193 374 IPR036412 -
Ssu3g1705 375 Coils Coil 127 158 - -
Ssu3g1705 375 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 47 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1705 Ssu-Chr3 51604242 51612591 Proximal