Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1174 ATGTTTCAGTTTCTAATTGTTCCCTCTTTAAACAATGAAAGCTTTTCGTACAACTTTACTTCTGTTGCAGGCTACTTATTAGGGTGGGGTTCATGTGTGATAGATTTCACTGGTGGAGGTTTCACAAACGGAGCAGTGGTAAAATGGCCCTTCATGAACAAAGTATCTGTTCATCCTCATTTGATGTCTTTCAATGCTCCTCAGGATGATAAGGCTAAAATCATGGTGTCTGATTCCATCACATCTGCTGGATTTTTGGCCGTCCCAAGTCTAGATGTGTTTGACTCAACTAAAAAACGTGCTGCTGGTGAACCTCAGAAATCTGTCAACCATGATGGACAAAGTGGCATTCATTTTTCCCTGACTCCATATCCTGTACAACATGATGTGAATTCTGTGAACCGTCCTCACGATGTGAAGATGTTTTCAGTTCCCAATCAAGCAATTTCAGTTTCCATGGGACATCCATCCCTAAAGAATCATTTTGCAACTGTTGGTCAGAATATGAATGGTGCTAGTGTGAACCAACCACTACTCGGGGGAATACCTGTTACAGCGCCTCATTCAGTTCTTCCCATTGTTGGTGCTGTTGCTGGAATGACCGAAacatgTGTGAAACCATCTGTATCTGCTTCTAAACTTACCATCTTCTATGCGGGCACTGTGAATGTCTTTGCTGATATCTCCCCTGAGAAGGCACAAGCTATCATGCTGTTGGCAGGGAATGGCTTATCAGCTGCTTCTAACGTGGCATATTCACATCCCAATGTTCAGGAGCCCAGCTTGAAGTTGGCAGTAGGTGATGGTGTGCCTGTTAGTCAACCCATAAATATGCCACCCTGCTCTAGTTTTTCAAGTCCTTTATCTGTTTCTTCACACACTGGTGCACAGTCAGGGAGTGGTTCAAGTAGCAATGATGAATTTCTGGCAGCTAAAACATCCGGAGGTCCCACCGCTTTGGTTAACGAAGTGGAGACTCCAAAAGTAGTCAACGCAACCACCATGTTACCATCTGCTGTGCCGCAGGCTCGCAAGGCATCGTTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTGATGAATGCAGCACCATATAACCTCAACAAGAAGTCTGAGAATGTGCCCCAGCAGAATACAATGGTTTCTAACATCACTGCAAGTGCTGGTACTGATGCCCTGTCAACCAAGCAAGGATAG 1197 0.4461 MFQFLIVPSLNNESFSYNFTSVAGYLLGWGSCVIDFTGGGFTNGAVVKWPFMNKVSVHPHLMSFNAPQDDKAKIMVSDSITSAGFLAVPSLDVFDSTKKRAAGEPQKSVNHDGQSGIHFSLTPYPVQHDVNSVNRPHDVKMFSVPNQAISVSMGHPSLKNHFATVGQNMNGASVNQPLLGGIPVTAPHSVLPIVGAVAGMTETCVKPSVSASKLTIFYAGTVNVFADISPEKAQAIMLLAGNGLSAASNVAYSHPNVQEPSLKLAVGDGVPVSQPINMPPCSSFSSPLSVSSHTGAQSGSGSSSNDEFLAAKTSGGPTALVNEVETPKVVNATTMLPSAVPQARKASLARFLEKRKERVMNAAPYNLNKKSENVPQQNTMVSNITASAGTDALSTKQG 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1174 398 Pfam tify domain 210 241 IPR010399 -
Ssu2g1174 398 MobiDBLite consensus disorder prediction 283 311 - -
Ssu2g1174 398 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 40 388 IPR040390 -
Ssu2g1174 398 SMART tify_2 207 242 IPR010399 -
Ssu2g1174 398 Pfam Jas motif 341 365 IPR018467 -
Ssu2g1174 398 PANTHER PROTEIN TIFY 7 40 388 - -
Ssu2g1174 398 ProSiteProfiles Tify domain profile. 207 242 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1174 Ssu-Chr2 52521237 52524388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1174 47 371 Tify Gene Family AT3G17860 35.362 4.05e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu2g1174 tify 6.3e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1174 2 52521237 52524388 Ssu2g1174 2 52521237 52524388 ECH