Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1164 ATGCTCCGAAACCTTTGGAAACGTCGTTGTCGCGTACGTTTGGATCCCACGTTCCTCTGCTCCTCGCCCACTTCACAATTTCACAGTGCCACCTGCACCCTCGCGGTGGAGGATCCTGGTTGGAGATGGAGGATGGAAGAACCCTCGGGTTTCGTGGACAAGGAAGAAGAAACCGCGCTTCGCATTTCGCATCCTTGGCCCGAGTGGGTCCAACTCATGAAGTGCTTGCTCCGTAAGGGACACTTTCATCACGCCGAGGGAAACCCGTTTCGCAATGCTGATTTGGACCCAAAAGATTGCAATGCCATTAGAACAGCGTGCCTCAATTTCGGCAGAGACCACTTtcatattttaagATTCTTGTCTCGAAAAGATATAGGAGTTGCTGTGGCACTTGGATGTCCGAGCTTAGATAGGAAGGTGGTCAACTCAGGAAAGCGTCTGAGAGCATATGTGGGTATTGATGAGGGAAATGTATGCAGTTCCTGCAATTTGAGGGGGGACTGTGAAAGGGCATTTGTGAAGGCGCGTGAAGATGAAGGTGGAAGAACAGTGGATGTTATGCGTATTATTTTGACTTATGGGCTTGATCCAATTATTGGTTCAGTGGAGAACAAACCATGTCTAACTAAAAGGGTAGAAGAATCTGTGAGAAGACTGCTGAAAGAAATAGTAGAGCACAGTACCAAAGaggaaaattctaatttttctgACAGCACAGAGGTTTTCATTCGACATGTTCATCCCAATCAGCAAGACAAGGGAAAAATAGATGTTCCAATGATGAAGCAAGGCGACTGGCTTTGCCCCAAATGCAATTTCATGAACTTTGCTAGAAACATCAGGTGCTTGCGCTGTGACAGCTTGTTTGAGGAAAGAATCAAGCAATTGAAGGAGGATAACAATCACCTACCTTTGAAGAAGGGAGACTGGATATGCAATAAATGCAATTTCCTAAATTTTGCAAAGAATACAAGATGTTTGCAATGCAAAGAGAAGCCTTCCAATCGTCACCTTAATCCCGGGGAGTGGGAATGTGACTCGTGCAATTACCTCAATTTCAGAAGAAACATGGTTTGCCTGAAATGTGATCATAGACGACCTATAGTGTCAAAggcttcaaactcttctcttcAACCTCGGCAAGAAGATATACACCACTATAAGAATAGCAAATTTGCTTTTGTGGCACATCAAGGTGATAGAAGTGATGAAACACCAATGGTTTTTGAAAGAAAGAACAGGAACAGAGATTCACATATGTGGAGATTTGTAGAGGATAGAAATGAAAATCACAgcttaaataaatcaaatgatcCTTCTGGATTTATAGATTTTCCTATTGTTGGAGGTAAGACTCACTTGTCTGGGGTACAAAGGAGAGAAGCGTACAAGACTGAGTTACCAAATCAGTGCAGAAGGCCTTCATGGCAAAGTGAAACTGATGATGAGTTTTGTTCTTCAGATAACCTGAGTACTGATGATGAGTTTTGTTCTGCCAATAACCAGAGTACTGATGATGAAGAAATGGACGAATGGTTTGGAAAAGGTAAGATTGAAAGGTAG 1566 0.417 MLRNLWKRRCRVRLDPTFLCSSPTSQFHSATCTLAVEDPGWRWRMEEPSGFVDKEEETALRISHPWPEWVQLMKCLLRKGHFHHAEGNPFRNADLDPKDCNAIRTACLNFGRDHFHILRFLSRKDIGVAVALGCPSLDRKVVNSGKRLRAYVGIDEGNVCSSCNLRGDCERAFVKAREDEGGRTVDVMRIILTYGLDPIIGSVENKPCLTKRVEESVRRLLKEIVEHSTKEENSNFSDSTEVFIRHVHPNQQDKGKIDVPMMKQGDWLCPKCNFMNFARNIRCLRCDSLFEERIKQLKEDNNHLPLKKGDWICNKCNFLNFAKNTRCLQCKEKPSNRHLNPGEWECDSCNYLNFRRNMVCLKCDHRRPIVSKASNSSLQPRQEDIHHYKNSKFAFVAHQGDRSDETPMVFERKNRNRDSHMWRFVEDRNENHSLNKSNDPSGFIDFPIVGGKTHLSGVQRREAYKTELPNQCRRPSWQSETDDEFCSSDNLSTDDEFCSANNQSTDDEEMDEWFGKGKIER 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1164 521 Pfam Zn-finger in Ran binding protein and others 307 331 IPR001876 -
Ssu2g1164 521 Pfam Zn-finger in Ran binding protein and others 263 288 IPR001876 -
Ssu2g1164 521 Pfam Zn-finger in Ran binding protein and others 342 364 IPR001876 -
Ssu2g1164 521 PANTHER ZINC FINGER PROTEIN 53 246 - -
Ssu2g1164 521 PANTHER ZINC FINGER PROTEIN 284 518 - -
Ssu2g1164 521 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 53 246 - -
Ssu2g1164 521 SUPERFAMILY Ran binding protein zinc finger-like 300 333 IPR036443 -
Ssu2g1164 521 Gene3D - 298 334 - -
Ssu2g1164 521 Gene3D - 256 289 - -
Ssu2g1164 521 Gene3D - 335 369 - -
Ssu2g1164 521 MobiDBLite consensus disorder prediction 499 521 - -
Ssu2g1164 521 ProSitePatterns Zinc finger RanBP2-type signature. 344 363 IPR001876 -
Ssu2g1164 521 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 284 518 - -
Ssu2g1164 521 ProSitePatterns Zinc finger RanBP2-type signature. 267 286 IPR001876 -
Ssu2g1164 521 ProSitePatterns Zinc finger RanBP2-type signature. 311 330 IPR001876 -
Ssu2g1164 521 ProSiteProfiles Zinc finger RanBP2 type profile. 340 369 IPR001876 -
Ssu2g1164 521 ProSiteProfiles Zinc finger RanBP2 type profile. 263 292 IPR001876 -
Ssu2g1164 521 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 262 286 - -
Ssu2g1164 521 PANTHER ZINC FINGER PROTEIN 262 286 - -
Ssu2g1164 521 ProSiteProfiles Zinc finger RanBP2 type profile. 307 336 IPR001876 -
Ssu2g1164 521 SUPERFAMILY Ran binding protein zinc finger-like 334 368 IPR036443 -
Ssu2g1164 521 SMART zf_4 265 289 IPR001876 -
Ssu2g1164 521 SMART zf_4 342 366 IPR001876 -
Ssu2g1164 521 SMART zf_4 309 333 IPR001876 -
Ssu2g1164 521 SUPERFAMILY Ran binding protein zinc finger-like 261 288 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1164 Ssu-Chr2 52197112 52199781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1164 55 330 EF-hand Containing Proteins AT1G55040 41.311 4.39e-60 211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1164 2 52197112 52199781 Ssu2g1164 2 52197112 52199781 ECH