Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1157 ATGTGCTTCATAACCCACCAAGCCATTTTCAACGCCGTTCGATGTGGGGACCTTGAAGGGATCAAGGAGCAGCTGAAGAACAAAGGTGAGTCCTCATCGCAGGGGCTTTCTGAGGTGATGTCCATGCAGAACGATGAAGGGGAAACCGTGTTGTATATAGCCGCTGAGCTTGGTCTTCGTGAGGTGTTCAGCTTCTTGCTTAGTTTTTGTGACTTGGAGGTGCTCAAGATCAGGTCCAAATCTGATATGAACGCCTTTCATGTTGCAGCCAAGCTTGGCCATttggATATTGTAAGGGAGATTTTGAGTACTTGGCCTGAGGTTTGTAAGTTATGCGACTCCTCTAACACTAGCCCTCTATATTCAGCTGCTGTACAAGGTCATTTGGATGTAGTGAATGCAATATTGGATTTTGATGTGAGTTCAATGATGATAGTAAGGAAAAATGGCAAAACTGCATTGCACAATGCTGCTAGATATGGCATCCTTCGCATTGTAAAAGCACTGATTGCCCGGGATCCTGGAATAGTCTACATCAAAGACAAAAAGGGTCAAACTGCACTGCATATGGCTGTGAAAGGACAGAGTACTTCAGTGGTGGAGGAGATATTACAAGCTGACACTTCGATATTGAATGAACAAGATAAGAAGGGTAACACAGCTCTTCACATGGCTACCAGGAAGGGCCGTTCACAGATAGTGAGCCTTCTGTTAAACTACACAGCTATGAATGTCAATGCCATCAATAATCAGAAGGAAACAGCCTTGGATTTGGCAGATAAACTGCCTTATGGAGATTCAGCTTTGGAAATAAAGGAGGACCTTGCGGAATGCGGTGCCAAGCATGCCAGGCATATTGGGAAAGTGGATGAAGCCATGGAACTAAAAAGAGCTGTGAGTGACATAAAGCATGAGGTGCAGTCACAGCTTATACAGAATGAAAAAACTCGCAAACGAGTTTCCGGTATTGCTaaggaattgaagaaaattCATAGAGAGGCAGTTCAAAACACCATCAATTCAGTCACAGTAGTAGCTGTCCTTATTGGCTCAATAGCATTCATGGCTTTGTTCAGTTTACCCGGTCAATATCGAAAGAAGCAACCAGAGGCAGGGAAGGCAAATATAGCTGATGATGTTGCCTTCAGTGCTTTCTGCCTTTTGAATGCTACAgctcttttcatttctcttgCAGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGAGCTCAAGAGCAGATTGTGTCAGTGATTAACAAGCTAATGTGGGCTGCATGTTCTTGCACATGTGGGGCTTTTCTTGCAATAGCCTTTGTGGTTGTTGGAGAGGAAACATGGCTGGCTATTAGTGTCACCCTTTTGGGAGCACCAATTCTAGTTGGCACTCTAGCATACTTGTGCTACTTTGTTTTCAGGCAGCATTTTGGACCCCGCAGTGATTCTCAGAGATTAGTCAAGAGAGCAAGTGGAAGCAAATCATTCTCATGGTCTTACTCGGTAAATATATCAAATGTGGATGATTATGATTCTGATCTTGAGAAGATGTATGCTCTATAA 1566 0.4266 MCFITHQAIFNAVRCGDLEGIKEQLKNKGESSSQGLSEVMSMQNDEGETVLYIAAELGLREVFSFLLSFCDLEVLKIRSKSDMNAFHVAAKLGHLDIVREILSTWPEVCKLCDSSNTSPLYSAAVQGHLDVVNAILDFDVSSMMIVRKNGKTALHNAARYGILRIVKALIARDPGIVYIKDKKGQTALHMAVKGQSTSVVEEILQADTSILNEQDKKGNTALHMATRKGRSQIVSLLLNYTAMNVNAINNQKETALDLADKLPYGDSALEIKEDLAECGAKHARHIGKVDEAMELKRAVSDIKHEVQSQLIQNEKTRKRVSGIAKELKKIHREAVQNTINSVTVVAVLIGSIAFMALFSLPGQYRKKQPEAGKANIADDVAFSAFCLLNATALFISLAVVVVQITLVAWDTRAQEQIVSVINKLMWAACSCTCGAFLAIAFVVVGEETWLAISVTLLGAPILVGTLAYLCYFVFRQHFGPRSDSQRLVKRASGSKSFSWSYSVNISNVDDYDSDLEKMYAL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1157 521 ProSiteProfiles Ankyrin repeat profile. 149 170 IPR002110 GO:0005515
Ssu2g1157 521 Pfam Ankyrin repeats (3 copies) 113 172 IPR002110 GO:0005515
Ssu2g1157 521 Pfam Ankyrin repeats (3 copies) 11 102 IPR002110 GO:0005515
Ssu2g1157 521 Pfam Ankyrin repeats (3 copies) 181 247 IPR002110 GO:0005515
Ssu2g1157 521 ProSiteProfiles Ankyrin repeat profile. 183 215 IPR002110 GO:0005515
Ssu2g1157 521 ProSiteProfiles Ankyrin repeat region circular profile. 149 170 - -
Ssu2g1157 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 521 - -
Ssu2g1157 521 ProSiteProfiles Ankyrin repeat profile. 217 242 IPR002110 GO:0005515
Ssu2g1157 521 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 1 521 - -
Ssu2g1157 521 SMART ANK_2a 183 212 IPR002110 GO:0005515
Ssu2g1157 521 SMART ANK_2a 81 110 IPR002110 GO:0005515
Ssu2g1157 521 SMART ANK_2a 217 247 IPR002110 GO:0005515
Ssu2g1157 521 SMART ANK_2a 149 178 IPR002110 GO:0005515
Ssu2g1157 521 SMART ANK_2a 115 145 IPR002110 GO:0005515
Ssu2g1157 521 SMART ANK_2a 46 74 IPR002110 GO:0005515
Ssu2g1157 521 Gene3D - 5 308 IPR036770 -
Ssu2g1157 521 SUPERFAMILY Ankyrin repeat 8 263 IPR036770 -
Ssu2g1157 521 ProSiteProfiles Ankyrin repeat region circular profile. 217 242 - -
Ssu2g1157 521 Pfam Domain of unknown function 333 442 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1157 Ssu-Chr2 52070030 52073624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1157 1 521 Miscellaneous Gene Families AT2G01680 65.784 0.0 706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1157 2 52070030 52073624 Ssu2g1157 2 52070030 52073624 ECH