Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1151 ATGCACCACCAACGAGCGACCGACCACGCCGATCCGCGTGTGGATCATCGGCTACGCGCTGCAGTGCCTCGTGCACGTGCTGCTCGTGTGGCTCGAGTACCGGCGCCGGGCCGGCGGGACTCGCGCCGCGGCCAGAGGGCAAGGGACGTCGAGAGCGACGCCGGTAGCGACGCCGCCGGCGACGAGAGCGACGACGGAGATGGGAGCTCTGGCAACTCGGCTCGCTCCGGattCACAAAACGATGTGAATCAATAAATACTGGGGTTTCATTCCTCTGGTGGATAGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATGTACTTCTGCAAGATGCCCCGCGATTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTTTTTGCCATCTTTTGTGTTGTCTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAgGAAGGTGCATCGGAAGCAGATCTTAGCATACTTCCAAAATACAGATTTCGAATATTCAGCAATGAGGATAAGCCCAGTGGTGGAGCTGGATCAATGGTTCCCACAGAAACCAGCAGTGCTTACTTGGCAAATGAACGGATTCTTTTACCTGAGGATTCGGAATGCTGTATATGCCTCTCTTCATATGAGGATGGAGCAGAGCTCCATGCTCTTCCCTGCAACCATCATTTCCATTCTTCATGCATAGTGAAATGGCTGAAGATGAATGCAACTTGTCCTCTCTGCAAGTACAATATTCTCAAGGGAAACGACCAAGTGTGA 804 0.5199 MHHQRATDHADPRVDHRLRAAVPRARAARVARVPAPGRRDSRRGQRARDVESDAGSDAAGDESDDGDGSSGNSARSGFTKRCESINTGVSFLWWIVGFYWVVSGGDVLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRIFSNEDKPSGGAGSMVPTETSSAYLANERILLPEDSECCICLSSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNDQV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1151 267 SMART ring_2 216 256 IPR001841 -
Ssu2g1151 267 SUPERFAMILY RING/U-box 203 261 - -
Ssu2g1151 267 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 41 267 - -
Ssu2g1151 267 MobiDBLite consensus disorder prediction 1 22 - -
Ssu2g1151 267 CDD RING-H2_PA-TM-RING 215 257 - -
Ssu2g1151 267 MobiDBLite consensus disorder prediction 33 55 - -
Ssu2g1151 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 265 IPR013083 -
Ssu2g1151 267 ProSiteProfiles Zinc finger RING-type profile. 216 257 IPR001841 -
Ssu2g1151 267 PANTHER TARGET OF ERK KINASE MPK-1 41 267 - -
Ssu2g1151 267 Pfam Ring finger domain 215 257 IPR001841 -
Ssu2g1151 267 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1151 Ssu-Chr2 51994463 52001945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1151 46 266 C3H Transcription Factor Family AT1G68070 70.588 5.32e-117 337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1151 2 51994463 52001945 Ssu2g1151 2 51994463 52001945 ECH