Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1148 ATGTTTGCAAAATGGGGCAGTCACTTGGATCATGTTGGCGCCTTAGTTTACTTCACTGAAGTTTGCGGGTATAATGGACCGGTTTACATGACGTACCCGACAAAAGCTTTGGCTCCTTTGATGTTGGAAGACTATCGGAAAGTGATGGTTGATCGCCGAGGAGAGGAAGAGCTATTCTCTTCTGATCAAATTGCTGAGTGCATGAAAAAAGTTATTGCTGTTGATCTGAGGCAGACTGTACAAGTAGATGAAGACCTGCAGATACGTGCCTATTATGCAGGACATGTTATTGGAGCTGCAATGTTCTATGTGAAAGTGGGAGACGCAGAAATGGTTTATACAGGAGACTACAATATGACACCAGATAGACACCTTGGAGCAGCTCAAATTGATCGACTACGACTTGACCTTCTTATAACTGAaTCCACATATGCGACTACAATACGTGATTCAAGATATGCTCGCGAGAGGGAATTCCTCAAAGCTGTTCATAAATGTGTATCTTGTGGAGGAAAGGTGCTTATTCCAACATTTGCACTTGGAAGAGCTCAGGAGCTGTGCATTTTGTTAGAAGACTACTGGGAACGCATGAATTTGAAGGTTCCTATCTACTTCTCAGCAGgtTTAACAATCCAAGCTAATGCATATTATAAGATGCTTATTAGTTGGACAAGCCGGAAGATTAAAGATACATACTCTAAACATAATGCTTTTGATTTTAAGAATgTTCACAAATTCGAAAGGTCTATGATAGATTCTCCTGGTCCTTGTGTTCTTTTTGCCACTCCTGGGATGATAAGCGGTGGATTTTCACTTGAAGTTTTTAAGCACTGGGCAGTGTCAGAAAATAACCTTGTCACTTTGCCTGGGTATTGTGTGGCTGGAACAATAGGTCATAAATTAATGTCAGATAAGCAGGACAAAATTGATCTGGATTCTGGTACAAAAATAGATGTGCGGTGCCAGGTTCATCAATTGGCTTTTAGTCCTCACACTGATTCTAAAGGGATAATggatcttgtaaaatttctcTCCCCGAAACATGTTATACTAGTGCATGGCGAGAAGCATAAGATGACTTCccttaaagaaaaaattcattCAGAATTGGGGATTCAGTGTTATGATCCTGCAAATAATGAAACTGTATGCATTCCTTCAACTCAATATGTAAATGCAGAAACCTCAGACACATTCATTCGAAGCTGCTTGAATCCGAACTTCACGTTTCAGAAATGCAGTTCAGCGGACATACGTGACTTTCCTACGATAGACAGGAATTTGATGCCTGAGCTTGAAGTTGAAGATGAAAGGGTAGCAGAAGGAGTTTTGGTTGTGGAGAAAGGAAAAAGGCCAAAGATTGTACACCAggatgaacttttgcttatgTTGGGTGAAAAGAAGCACGATGCTTAG 1416 0.3927 MFAKWGSHLDHVGALVYFTEVCGYNGPVYMTYPTKALAPLMLEDYRKVMVDRRGEEELFSSDQIAECMKKVIAVDLRQTVQVDEDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNMTPDRHLGAAQIDRLRLDLLITESTYATTIRDSRYAREREFLKAVHKCVSCGGKVLIPTFALGRAQELCILLEDYWERMNLKVPIYFSAGLTIQANAYYKMLISWTSRKIKDTYSKHNAFDFKNVHKFERSMIDSPGPCVLFATPGMISGGFSLEVFKHWAVSENNLVTLPGYCVAGTIGHKLMSDKQDKIDLDSGTKIDVRCQVHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKHKMTSLKEKIHSELGIQCYDPANNETVCIPSTQYVNAETSDTFIRSCLNPNFTFQKCSSADIRDFPTIDRNLMPELEVEDERVAEGVLVVEKGKRPKIVHQDELLLMLGEKKHDA 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1148 471 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 317 375 IPR011108 -
Ssu2g1148 471 Gene3D - 151 329 - -
Ssu2g1148 471 SUPERFAMILY Metallo-hydrolase/oxidoreductase 7 385 IPR036866 -
Ssu2g1148 471 Pfam Metallo-beta-lactamase superfamily domain 8 130 IPR001279 -
Ssu2g1148 471 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 8 470 - -
Ssu2g1148 471 PANTHER INTEGRATOR COMPLEX SUBUNIT 11 8 470 - -
Ssu2g1148 471 Gene3D - 8 366 IPR036866 -
Ssu2g1148 471 SMART Beta_Casp_2 183 301 IPR022712 -
Ssu2g1148 471 Pfam Beta-Casp domain 183 301 IPR022712 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1148 Ssu-Chr2 51928536 51944322 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1148 2 51928536 51944322 Ssu2g1148 2 51928536 51944322 ECH