Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1142 ATGGCTGCGTCGCTGCAGAGAGCGGCGGCGCATTCGGGCGGCGACGCGTGCAACGGCGCGGCGGAGTTCCCGGCGGGGCTCCGGGTTCTTGTCGTGGACGACGACGCCACCACGTTGAAGATTATCGAGCAAATGTCTATTCGCTGCCGTTACCGCGTTACCACATGCACTGAGGCTACTGTTGCTTTGAATCTTCTGCGGGAAAGGAAAGGTTGTTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGCTGGAAATGGACCTTCCTGTTATTATGATGTCTGGTGATAGTACAACAAGTGCTGTCATGAAGGGAATCAGACATGGGGCTTGTGATTATTTGATTAAGCCTGTACATGAGGAAGAACTAAGGAATATTTGGCAGCATGTTGTTAGGAAAATCtggaatgaaaataaagaacatGATAATTCTGGCAGCATGGAAGATAGTGATCGGAATAAACAGGGGAATGATGATACTGAATATACTTCTTCTATTGTTGATGCAGCAGAAGTAGTTAAAGCACCAAAAAAGAGGAGCAgtttaaaagaagaagatgcTGAATTGGAGAGCGATGATCCAGCTACATCTAAGAAGCCCCGTGTAGTGTGGTCCGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGACAAGGCCGTGCCAAAGAGAATACTTGAGTTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCAAGTCATTTGCAGAAATTTAGACTTTATTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGCTAAACACAGTTCCTGGGACTATAGAATCCAAGCTGGGTGCTACCGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCCCCTGAAACACTTGCAGCTCTTCATGCTGAGCTCTTAGGTCGCCCGGCAACTAACGTAATGCCTACAGTGGACCAGACTACCTTACTGCAAGCATCCATACAGGGGTCAAAACAGTCCCATGCTGAACATGCTGTGGCATATGGTCAGCCTCTTGTAAAGTGTCCTTCCAACATTGGCAACAATTTCCCTCCATCTCTCTTAACTGTAAATGATACGTCATCAGGATATGGTGCATGGCCATCATCTAATAATACAATTGGTTCAGTGCGACCCAATAATAGTGTTGAAAGGGTGGGTATTCAGAATAACAACATGCTGATGGATATATTAGAACACCAACGAAGACAGCAGCACCAGCAAAAACAACAGCAACAGCTGCAGCAGCCGGCAGTCACTGATACATGA 1332 0.4512 MAASLQRAAAHSGGDACNGAAEFPAGLRVLVVDDDATTLKIIEQMSIRCRYRVTTCTEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVHEEELRNIWQHVVRKIWNENKEHDNSGSMEDSDRNKQGNDDTEYTSSIVDAAEVVKAPKKRSSLKEEDAELESDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNTVPGTIESKLGATGRFDIQALAAAGHVPPETLAALHAELLGRPATNVMPTVDQTTLLQASIQGSKQSHAEHAVAYGQPLVKCPSNIGNNFPPSLLTVNDTSSGYGAWPSSNNTIGSVRPNNSVERVGIQNNNMLMDILEHQRRQQHQQKQQQQLQQPAVTDT 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1142 443 MobiDBLite consensus disorder prediction 422 443 - -
Ssu2g1142 443 MobiDBLite consensus disorder prediction 428 443 - -
Ssu2g1142 443 Pfam Response regulator receiver domain 29 138 IPR001789 GO:0000160
Ssu2g1142 443 MobiDBLite consensus disorder prediction 184 209 - -
Ssu2g1142 443 MobiDBLite consensus disorder prediction 152 210 - -
Ssu2g1142 443 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 437 IPR045279 GO:0009736
Ssu2g1142 443 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Ssu2g1142 443 SMART REC_2 27 139 IPR001789 GO:0000160
Ssu2g1142 443 Pfam Myb-like DNA-binding domain 213 261 IPR001005 -
Ssu2g1142 443 CDD REC_typeB_ARR-like 29 143 - -
Ssu2g1142 443 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Ssu2g1142 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Ssu2g1142 443 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 23 437 - -
Ssu2g1142 443 PIRSF RR_ARR_type-B 6 443 IPR017053 GO:0003677|GO:0003700|GO:0009736
Ssu2g1142 443 SUPERFAMILY CheY-like 26 150 IPR011006 -
Ssu2g1142 443 Coils Coil 416 436 - -
Ssu2g1142 443 Gene3D - 27 163 - -
Ssu2g1142 443 Gene3D - 207 270 - -
Ssu2g1142 443 MobiDBLite consensus disorder prediction 152 170 - -
Ssu2g1142 443 ProSiteProfiles Response regulatory domain profile. 28 143 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1142 Ssu-Chr2 51794506 51798765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1142 61 325 Response Regulator Gene Family AT3G16857 54.225 6.07e-94 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ssu2g1142 Response_reg 7.4e-22 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1142 2 51794506 51798765 Ssu2g1142 2 51794506 51798765 ECH