Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1140 ATGGATCAACGGAGAGATTTTGCACTTACCCAGATCAGGAAATCCGTTGAGAAGCTTGGTTCTTCTACAGAGGGCTATGGGGACCATACACTGATGAGGTTTTTGATTGCTCGATCAATGGAGGTGGAAAAGGCTGCAAAGATGTTTGTGCAGTGGCAGAAATGGAGGGCTGCCACGGTGCCTAATGGGTTCATTTCAGGTTCGGAAATTCCGGATGAATTGGAAGCAAGGAAGATCTTGTTGCAGGGCTTGTCTCAGGATAAATTCCCTGTGATGATTGTACAAGCAAGCAGACATTTTCCTTCCAAGGATCAGATTCAATTCAAGAaatttgttgtatatatacTGGACAAGACAATTGCAAGTGCTTTCAAAGGAAGGGAGATAGGAAATGAAAAGTTGATTGGGATTCTTGATCTGCagaatatttcatataaaaatattgatgcaCGTGGGTTAATCACAGGATTTCAATTTTTACAGGCTTACTACCCTGAACGTTTAGCAAAGTGCTACATTTTACACATGCCATGGTTTTTTGTGAGTGTTTGGAAACTAGTTTCTCGCTTCCTAGAAAAGGCTACACTAGAAAAGATTGTAATTGTAACCAACGAGGATGAGACAAGGGAGTTTATAAGAGAGGTTGGTGAAGACGTTCTCCCAGAAGAGTATGGTGGAAGAGCTAAACTTGTAGCTATCCAAGATGTTGAATTAACACCGGTGGAAAATGGAACAAGAAATTGA 744 0.3965 MDQRRDFALTQIRKSVEKLGSSTEGYGDHTLMRFLIARSMEVEKAAKMFVQWQKWRAATVPNGFISGSEIPDELEARKILLQGLSQDKFPVMIVQASRHFPSKDQIQFKKFVVYILDKTIASAFKGREIGNEKLIGILDLQNISYKNIDARGLITGFQFLQAYYPERLAKCYILHMPWFFVSVWKLVSRFLEKATLEKIVIVTNEDETREFIREVGEDVLPEEYGGRAKLVAIQDVELTPVENGTRN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1140 247 SUPERFAMILY CRAL/TRIO domain 69 229 IPR036865 -
Ssu2g1140 247 SMART sec14_4 73 229 IPR001251 -
Ssu2g1140 247 Gene3D - 1 239 IPR036865 -
Ssu2g1140 247 SUPERFAMILY CRAL/TRIO N-terminal domain 3 63 IPR036273 -
Ssu2g1140 247 Pfam CRAL/TRIO domain 79 226 IPR001251 -
Ssu2g1140 247 PANTHER OS03G0850700 PROTEIN 1 239 - -
Ssu2g1140 247 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 67 232 IPR001251 -
Ssu2g1140 247 CDD SEC14 71 226 IPR001251 -
Ssu2g1140 247 PANTHER SEC14 CYTOSOLIC FACTOR-LIKE 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1140 Ssu-Chr2 51751259 51761787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1140 24 202 Acyl Lipid Metabolism Gene Families AT1G55840 24.870 7.95e-15 70.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1140 2 51751259 51761787 Ssu2g1140 2 51751259 51761787 ECH