Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1130 ATGAAAATCAGATCAAGAAAATCGAAGCGTAAACTCGAGCCGGAGCCACCTCCACGCAACATCACCAAGAAGCTCCGGCAGAAGCTCCCTCGCCGGCGCCGGCAAAACATCTCGCCGGTGCTTCTCTTCAGAATCTCCGGCGAGAATCCTGGCTTCTCCGTCGACTCGAGCTCCGGCTCCGACTTCGCCGCCGGCGAAGCCTCGTGCAACTCGAGCAGAGCCTCCGCTGCCGGCAAGGGAAACACGAACTCGTGGAACGAATCGTCAATCGATTCAGCGAGAAATCGAAGATTCGAGAAGCGAAACGAAAACGAAGTGGAGGTGTCAGAGTCTTCGTGCGTGGACTCGAGCGAACGAAGCAGAAGCCTGATTCTGAAgttcaaaagagaaaataataagaatccGAAAGAAAACGACGACGTTTCGGACACGAAATCAGATATTACTACTATTCCGAACTTCAAAAGCGGAAGAGAAACTAAGAATCTAAAAGAAAACGACGACGTCTCGTGCACGAAATCAGAGATTACTAGCGAGGAACAGTGTAACTTAAAGTCCGGTAACGGAGACATTAAAATCTCTTCGGAGTCAAACGGAAACGACGTCGTGTCGTTTAGTTTGGGCCTTCGCGCGTCGTTTGAGGAGGAAAAGAATAGAAACAAGGAAAACAGGGCGTCGGAATCTGAATACTCTTCTAGAAACCTCCACGCGGAAGAGACTTGCGCGGATTTAATAGCGCAATCGATTACGAAGCAGGAGGAGTCGGATAACTATGACGTCGTTGCGGATCTCGCTTGCTCTGAGGATCTGCGATTCTCGTACTGTGACGACAAATCGGAGTACTCTTCCAGCCAGGGAACTGTGTTCTCTGAACTTCATTCCGAGATTTTTGGCGAATGCTCGCAGCCGGAGCTTTTGGATTACTCTCCCTCGCTGTTCGAGGATTCCGGAAGCCAGTTTTCGCAGGGATCCGTCGGCGAAACTCCTTCGCCGACGTATTTGTTGTTCCTTCAGTACCGCAAGGAGTTCTCCACGCTGGCTTCTGCTTCTCCAGTGATGAACGCTTCAAGCGTTGTCGAAGATGATGTCAATTTTGTGAGATTCGAAGATTCGGATGACGAAGAGAGCTACCAGATACTGAGGAAGAGGGAAAGGAGGCAGGGTTTTCTGACGAATTACGGTGAAAGATATTTCTGTACGACCGAATTCGGAGAGACCGTGCTTGAGCAACGTACGCAAATGGTTCAGTGGATGGTTGAGCAATCTTATCGAAAACAGCTTCGGCAAGAGACAATGTTTCTTGGAGTCAACCTACTCGACCGTTTCCTAAGCAAAGGATACTTCAAAGCCAAAAGAAACCTTCAAATTGTTGGAATAGCTTGCCTCACGATAGCGACCAGGATCGAAGAAAACCAGCAATATAACAGGTTTTACCTAAAAACAGCCAATGCTGATGCAGTCGTTGAGAAGAGGGTCAAGTATCTGGCAGTGCTGGCACTGTCAGGTCATGAGCAGCTGTGCTACTGGCCTTCAACAGTTGCTGCAGCACTTGTAATCCTTGCTTGTCTTGAAGTCAATCAAAATTCATCCCTCGAAATCAAAaggATCCACGTTAGATCAAAAGATGATAATTTGTATGAATGCATAGAGAGCCTGGAGTGGTTGTTACGCTATCTAGGATAA 1683 0.4759 MKIRSRKSKRKLEPEPPPRNITKKLRQKLPRRRRQNISPVLLFRISGENPGFSVDSSSGSDFAAGEASCNSSRASAAGKGNTNSWNESSIDSARNRRFEKRNENEVEVSESSCVDSSERSRSLILKFKRENNKNPKENDDVSDTKSDITTIPNFKSGRETKNLKENDDVSCTKSEITSEEQCNLKSGNGDIKISSESNGNDVVSFSLGLRASFEEEKNRNKENRASESEYSSRNLHAEETCADLIAQSITKQEESDNYDVVADLACSEDLRFSYCDDKSEYSSSQGTVFSELHSEIFGECSQPELLDYSPSLFEDSGSQFSQGSVGETPSPTYLLFLQYRKEFSTLASASPVMNASSVVEDDVNFVRFEDSDDEESYQILRKRERRQGFLTNYGERYFCTTEFGETVLEQRTQMVQWMVEQSYRKQLRQETMFLGVNLLDRFLSKGYFKAKRNLQIVGIACLTIATRIEENQQYNRFYLKTANADAVVEKRVKYLAVLALSGHEQLCYWPSTVAAALVILACLEVNQNSSLEIKRIHVRSKDDNLYECIESLEWLLRYLG 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1130 560 SUPERFAMILY Cyclin-like 371 474 IPR036915 -
Ssu2g1130 560 SMART cyclin_7 416 497 IPR013763 -
Ssu2g1130 560 ProSitePatterns Cyclins signature. 411 442 IPR006671 -
Ssu2g1130 560 MobiDBLite consensus disorder prediction 92 113 - -
Ssu2g1130 560 CDD CYCLIN 411 470 IPR013763 -
Ssu2g1130 560 PANTHER CYCLINS 1 550 IPR039361 -
Ssu2g1130 560 MobiDBLite consensus disorder prediction 127 160 - -
Ssu2g1130 560 MobiDBLite consensus disorder prediction 8 22 - -
Ssu2g1130 560 MobiDBLite consensus disorder prediction 72 113 - -
Ssu2g1130 560 Gene3D - 473 559 - -
Ssu2g1130 560 MobiDBLite consensus disorder prediction 72 91 - -
Ssu2g1130 560 Pfam Cyclin, N-terminal domain 406 479 IPR006671 -
Ssu2g1130 560 SUPERFAMILY Cyclin-like 473 556 IPR036915 -
Ssu2g1130 560 Gene3D - 406 471 - -
Ssu2g1130 560 PANTHER CYCLIN-SDS 1 550 - -
Ssu2g1130 560 MobiDBLite consensus disorder prediction 127 144 - -
Ssu2g1130 560 MobiDBLite consensus disorder prediction 1 39 - -
Ssu2g1130 560 PIRSF Cyclin_A_B_D_E 472 557 IPR039361 -
Ssu2g1130 560 PIRSF Cyclin_A_B_D_E 56 270 IPR039361 -
Ssu2g1130 560 PIRSF Cyclin_A_B_D_E 377 472 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1130 Ssu-Chr2 51474152 51480812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1130 409 523 Core Cell Cycle Gene Families AT3G11520 29.560 1.21e-10 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1130 2 51474152 51480812 Ssu2g1130 2 51474152 51480812 ECH