Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1129 ATGATTCCTATCTGTTCCCCACTGTCCTTTGTCGGTATTTTATTAGTGGCAAATCCCATCATGGAGAAATATCCAAGTTCACTCTGTTTTGATTTCTTACAGATAAGAACAGTTAAGGTTAGCAACATATCATTGGTTACTTCCAAGAAGGACATTGAAGAATTCTTTTCATTCTCAGGTGATATTCGATATATTGAGATGCAAAGGGAAAGTGATCGCACTCAGGTTGCTTATGTTACATTTAAGGATACACAGGGAGCAGACACAGCAGTTCTTTTAACAggTTCCAAGATAGGTGATCTATATGTCACCATCACACCTGTGGAGAAGTATCAGCTGCCCCCTGAAGCTCTTCCCTCAAGTCCGACAAACCAAAGTGCTGATGCAGTTAAGAAGGCTGAAGATGTAATGAGCACCATGCTTGCTAAGGGTTTCATTTTAGGAAAGGATGCTATCAACAGGGCAAAAGCCTTTGATGAACGTCATCACTTGACCTCAAATGCTTCTTCCACAGTTGCTTCCATTGATCGTAGAATGGGTTTAAGTGATAAACTGAGTATTGGAACAGCTATTGTCAATGAAAAGGTGAGAGAGATGGATGAAAGGTATCAGCTTTCTGAAATGACAAAGTCTGCTATGGCTGCTGCGGAGCAAAAGGCAAGTAGTGCTGGATCTGCTATCATGAGCAATTCTTACATATTAACCGGAGCTTCATGGATGTCCAGTGCCTTTACTGCTATAGCAAAGGCAGCCGGGGATGTCAGCATGATGACCAAGGAGAAAGTTGACCAGGCCGGGGTGGAAAGGAACGAGATCATTTATAGTCAAAGGAAAGGAACTGTTGATGAATTTGCAAAGATGCACTTTGAGGAGGCTTCAGACATGGGCCCTGCAGTAGTTCCTGTTAATTCAGATGATGACAGGAAGCTGGCAATTATATAA 942 0.4204 MIPICSPLSFVGILLVANPIMEKYPSSLCFDFLQIRTVKVSNISLVTSKKDIEEFFSFSGDIRYIEMQRESDRTQVAYVTFKDTQGADTAVLLTGSKIGDLYVTITPVEKYQLPPEALPSSPTNQSADAVKKAEDVMSTMLAKGFILGKDAINRAKAFDERHHLTSNASSTVASIDRRMGLSDKLSIGTAIVNEKVREMDERYQLSEMTKSAMAAAEQKASSAGSAIMSNSYILTGASWMSSAFTAIAKAAGDVSMMTKEKVDQAGVERNEIIYSQRKGTVDEFAKMHFEEASDMGPAVVPVNSDDDRKLAII 313
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1129 313 SMART rrm1_1 37 106 IPR000504 GO:0003723
Ssu2g1129 313 Gene3D - 34 106 IPR012677 -
Ssu2g1129 313 SUPERFAMILY RNA-binding domain, RBD 32 112 IPR035979 GO:0003676
Ssu2g1129 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 100 IPR000504 GO:0003723
Ssu2g1129 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 110 IPR000504 GO:0003723
Ssu2g1129 313 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 29 311 - -
Ssu2g1129 313 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 29 311 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu2g1129 Ssu-Chr2 51470793 51472731 Transposed
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1129 2 51470793 51472731 Ssu2g1129 2 51470793 51472731 ECH