Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1127 ATGGCTCTCTGCACCCCTTCCTCCTCCAtcttcttcttcaccttcttGTTCCTCTTCAATCTTCAACCCTCACTTTCCCAACAAGAACTCACATCCTTCAACATCTCGAACTCCCCATGGCTCCCATCACAGAACAAAACCCTTCTCTCTCCCGACAAAAACTTCACTGCAGGCTTCTTTCCCCTCCCCAACTCCAACCTCTTCACTTTCTCCATTTGGTACTCCAAAGTCCCTAAAAGTGCAAACCCTCTTGTGTGGAGTGCCACAACCCAAGTGAACAGTTCTGGCTCCCTTGTCATCACCTCAAAAGGTGAACTTCTCCTCAATGGTGCACCCTTTCAAGACGCCAGCAATGCTACCTCGTCCTCCCCTTCCAATTCAACCCAACTTGTTCTCCTAAACGTTGGAAACTTGGTTTTTGGGAACTGGAGCAGCTTCAAGAACCCCACCAACACCGTTTTGCCCAACCAGAACTTCAACAGCACTGGGATTGAGCTTCACTCCAGCAATGGGAAATTCAGGTTCATCAAGTCTCAGCTTCTGGTCCTCAATTCCACCTCTGCTCAATACTACAGCACCCCAAATCCCTTGCTGAGCATGGATGATTTAGGGAAAATGAGCATGGTAAGTAACTCTTTCCTCACTTCAGACTATGGTGACCCCAGGTTCAGAAAACTGGTCCTTGATGATGATGGGAATCTCAGAATCTACAGCTTCTACCCTGAGCAGAACAATCAGTGGGTTGAGGTTTGGAAAGGGATGTGGGAGATGTGCCAAATTAAAGGCAAATGTGGGCCTAATTCCATTTGTGTTCCCAGAGATTTGAACACTTCTACTTATTGTGTTTGCCCATCTGGGTTCATTCCAAACAAAGGTAGGCCTGAAGAGGGTTGCACAAGGAGTATCCCTCTTTCCCAACACACCCAATTTGTCAGGCTGGATTATGTGAACTACACCAGTGATGGTAGTTTGAGACCAATCAATGCTGAGAACTTCACTATCTGTGAGTCATCCTGCTCAACAGACAAAACCTGTCTTGGGTTTGGCTTCAAGTATGATGGATCTGGCTACTGTGTGTTGCTGAGCGGGGAAAATCTTCAATATGGGTACTGGTCACCAGGCACTGAGACTGCCATGTTTGTGAAGGTTGACCAATCTGAGTCATCAGCCTCCAACTTCATTGGCATGACTGAGGTGATGCAAACCACATGCCCTGTGAACATAAGCCTCCCACTGCCACCAAAGGACTCCAACACCACTGCCAGAAACATTGCCATAATCTGCACCCTTTTTGCTGCAGAACTCATAGCTGGGGTGGCCTTCTTCTGGTCCTTCCTGAAGAGGTACATCAAGTACAGGGACATGGCCACCACATTAGGCCTTGAGCTTCTCCCTGCTGGGGGCCCCAAGAGGTTCACCTACTCAGAAATCAAAGCTGCCACCAATGACTTCTCCAACCTCATAGGAAAAGGAGGCTTTGGAGATGTCTACAAAGGGGAGTTGCCAGACCACAGGGTGGTGGCAGTGAAGTGCCTCAAGAATGTTACAGGAGGAGATGCAGAGTTCTGGGCAGAAGTCACAATCATCGCCAGGATGCACCACCTCAACTTGGTGAGGTTGTGGGGCTTCTGTGCTGAGAAAGGTCAAAGGATACTTGTCTATGAACACATCCCTGGTGGCTCATTGGACAAGTACCTCTTCAGGGTCAagtctcataataataataaccatctCAAAGACCAAACAAGTCCAAGCCCACAACAAAGGCCTGTTTTGGATTGGAGCATGAGGTACAGAATTGCCCTTGGTGTGGCAAGGTCTATTGCTTATTTGCATGAGGAGTGCTTGGAGTGGGTTTTGCACTGTGACATCAAGCCTGAGAACATTTTACTAGGTGATGATTTTTGTCCCAAGATTTCAGATTTTGGCTTGGCCAAGTTGAGGAAAAAAGAGGACATGGTGACCATGTCTAGAAGGAGGGGCACTCCTGGGTACATGGCACCTGAATGGATCACTGCTGACCCAATCACTTCCAAGGCTGATGTGTATAGTTTTGGTATGGTGCTGTTGGAGCTTGTGAGTGGGATTAGGAACTTTGAGATCCAAGACTCTGTGGTTAGGAGTGAGGAATGGTACTTCCCTGGTTGGGCCTTTGATAAGATGTTTAAGGAGATGAGAGTGGAGGAAATTTTGGATGGGCAGATTAGGGATGCTTATGATAGTAGGGCCCACTTTGAGATGGTTAATAGGATGGTGAAGACTGCCATGTGGTGCCTCCAGGACAGGCCCGAGTTGAGGCCCACTATGGGGAAGGTGGCCAAGATGTTGGAAGGGACTGTGGAGATCACTGAGCCCAAGAAGCCCACTGTCTTCTTCCTTGGGGAAGAGTAA 2391 0.4755 MALCTPSSSIFFFTFLFLFNLQPSLSQQELTSFNISNSPWLPSQNKTLLSPDKNFTAGFFPLPNSNLFTFSIWYSKVPKSANPLVWSATTQVNSSGSLVITSKGELLLNGAPFQDASNATSSSPSNSTQLVLLNVGNLVFGNWSSFKNPTNTVLPNQNFNSTGIELHSSNGKFRFIKSQLLVLNSTSAQYYSTPNPLLSMDDLGKMSMVSNSFLTSDYGDPRFRKLVLDDDGNLRIYSFYPEQNNQWVEVWKGMWEMCQIKGKCGPNSICVPRDLNTSTYCVCPSGFIPNKGRPEEGCTRSIPLSQHTQFVRLDYVNYTSDGSLRPINAENFTICESSCSTDKTCLGFGFKYDGSGYCVLLSGENLQYGYWSPGTETAMFVKVDQSESSASNFIGMTEVMQTTCPVNISLPLPPKDSNTTARNIAIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEHIPGGSLDKYLFRVKSHNNNNHLKDQTSPSPQQRPVLDWSMRYRIALGVARSIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGIRNFEIQDSVVRSEEWYFPGWAFDKMFKEMRVEEILDGQIRDAYDSRAHFEMVNRMVKTAMWCLQDRPELRPTMGKVAKMLEGTVEITEPKKPTVFFLGEE 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1127 796 SMART blect_4 43 149 IPR001480 -
Ssu2g1127 796 PIRSF SRK 2 796 IPR024171 GO:0004674
Ssu2g1127 796 Pfam S-locus glycoprotein domain 219 290 IPR000858 GO:0048544
Ssu2g1127 796 Gene3D Phosphorylase Kinase; domain 1 456 556 - -
Ssu2g1127 796 Gene3D Transferase(Phosphotransferase) domain 1 558 788 - -
Ssu2g1127 796 Pfam Protein kinase domain 486 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1127 796 PANTHER OS10G0101000 PROTEIN 8 796 - -
Ssu2g1127 796 ProSiteProfiles PAN/Apple domain profile. 298 384 IPR003609 -
Ssu2g1127 796 PANTHER OS07G0415500 PROTEIN 8 796 - -
Ssu2g1127 796 CDD STKc_IRAK 488 778 - -
Ssu2g1127 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Ssu2g1127 796 Gene3D - 34 148 IPR036426 -
Ssu2g1127 796 ProSiteProfiles Protein kinase domain profile. 482 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1127 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 161 IPR036426 -
Ssu2g1127 796 SMART serkin_6 482 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1127 796 ProSitePatterns Protein kinases ATP-binding region signature. 488 510 IPR017441 GO:0005524
Ssu2g1127 796 SUPERFAMILY Protein kinase-like (PK-like) 465 777 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1127 Ssu-Chr2 51409834 51412224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1127 397 779 Receptor kinase-like Gene Family AT4G18250 36.616 3.09e-76 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu2g1127 Pkinase 1.5e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1127 2 51409834 51412224 Ssu2g1127 2 51409834 51412224 ECH