Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1126 ATGTCAAGGTTTTTGGAGTCAGTACGACCACATTGTGGTTGCATTGACCGTATTTGTTTGCAATTTCTTACAACATCAAGGATCGCGATAAAACTACAACTAGGgtggcaatttaaaaccttgagaGTCATGGTGAAAACCCATGTGAGCTTTGTTCTTTGgcttgttgtgttgttgttttgtgtgGGGTTTGAGCGTGCATGGTGTCAGGATGATGTTGTTGTGATGAACACGCTCAAGAAGGCCGTCACAGAACCCAATGATCTTCAATGGAGTGACGCAGATGTGTGTAAATGGAAACACGTTCAGTGCAGCACCATGAAGAGGGTCACTGCAATTCAAATTGGAGGACTGAGTCTGAAAGGTTCTCTGCCTAAGGAGCTGGCGCAGCTCTCAGCGTTGACACGTTTTGAGTGCATGAGCAATGGCTTCACTGGGCCATTCCCTTCCATGCCAAAGTCCCTTGAGGTTCTGATCATCCACAACAACAATTTCAGCTCCATGCCGGGTGATTTCTTCACCGGCATGACCAATTTGCAAGATGTGGACATTGGCTACAACCCTTTCCCAAAGTGGGAGATTCCTGTTGGCCTCAATGACTGTGTGTCTCTCAGGGATTTCTCTGCAGTCAGTGCTGGCCTTGTGGGGAAAATCCCAGATTTTTTTGGGAAAGATGGTCCCATGCCAGGTTTGGTTTCTCTTAGCTTGAGTTTTAATTCTCTTGATGGAGGGCTGCCTGCAGCCCTTTCTGGGAGTTCTATAGAGATCCTTTGGGTGAATGGTCAGGAAAGTAGTGGTAAACTCAATGGTACCCTTGATGTGTTGAAGAACATGACATCTTTGAAACAAATTTGGGTACATGGTAACTCATTCACAGGTCCTATACCGGACTTGTCAAACCATGATCAACTGTTTGATGTGAGTTTGAGGGATAACCAGTTGACTGGGGTTGTTCCACCCTCTCTCACTGCTCTTCCTGCTCTTAAAGTTGTGAATTTGACCAATAACCTTCTTCAAGGATCCCCTCCTGTGTTCAAACCTGGAGTCAAGGTTGATAATGATTTAGACAAGGGGCAGAATAGTTTTTGCACAAAGGAGCCTGGTAAGCCATGTAGTCCCCTTGTGGATGCTTTGCTTTCTGTCGTTGAACCTTTGGGGTATCCTCCAATATTTGCTGATAAATGGACGGGGAATGACCCTTGTCGTCAAAATTGGATGGGGATTATTTGCTCAAGTGGTAACATTTCCGCTATTAGTTTTCAGAGCATGAATCTCACTGGTAACATTTCTCCCAGTTTTGCCAGGCTTACATCTGTGACAGAGTTGCTTCTTGCTAACAATGGCCTCACTGGTACCATACCAAGTGAACTCATCAGTATGCCTCTTTTGAAAAAGCTGGATGTTtccaataataaattgtatGGTAAGGTGCCGTCTTTCAGCAGAGATGTAGTTCTTAATACTGATGGGAATCCTGATATTGGAAAGGATATTCCTCAAGCCCCGCCTGGCTCGAATTCTGGGGGTAAATCTGGAGGTGAAGGTAAGAAATATAACACTGGAGCAATTGTTGGCACTGTGGTGGGGGGTTTCAGTTTACTTGGTTTAGGTGCTCTGGTGTTTATTATGTATGTTAGAAAACATAAGCATGCTGGCAAAGTTCAAAGTCCTAGTGCAATAGTGGTACATCCTCGTCATTCTGGAGATGGAAATGGTCTGAAGATAAGTGTTGCAGCTTCAGGtgctagtggtggtggtggaggaggaggaggaactAGTGTATTTAGTCCAACTAGTAGTGTTCAACATGTGGAAGCTGGTAATATGGTGATTTCTATCCAAGTTTTGAGGGAAGTTACAAACAATTTCAGTGAAGGAAACATATTGGGGAGGGGTGGTTTTGGCACTGTATACAAAGGAGAATTGCATGATGGAACAAAGATTGCAGTGAAAAGGATGGAATCTGGAATGATGGGAGAGAAGGGGCTGAGTGAATTCGAGTCCGAAATTGCAGTACTTACTAAGGTTCGACACAGGCATTTGGTTGCACTCGAAGGCCATTGCTTGGATGGAAAGGAGAAGCTTCTTGTGTATGAATACATGCCCCAGGGCCCTCTTAGTAAACATTTATTTGAGTGGAAAGAGGAAGGGTTACAACCACTGGAATGGAAGAGAAGGCTTTCCATTGCCTTGGATGTTGCGAGAGGTGTTGAATACCTTCATGGTTTGGCCCAACAAATTTTTATCCATAGGGATCTAAAACCATCAAACATCTTACTTGGGGATGATATGCGGGCCAAAGTGTCAGACTTTGGATTGGTTCGGCTTGCTCCAGAAGGGAAGACCTCATTCGAGACTAGGCTTGCTGGAACTTTTGGATATTTGGCACCAGAGTATGCAGTCACCGGACGAGTTACAACGAAGGTTGATGTATACAGCTACGGGGTGATTCTCATGGAGATGATAACAGGAAGGAGAGCAATTGACAACAGCCAACCAGAAGAGAACATCCACCTTGTTACATGGTTCAGAAGGATGCTACTGAACAAAGACTCATTCGGAAAGCTCATTGACCCCACAATGGATGTTGATGAGGAGGCCTTTACAAGTTTTAGGACTGTGGCCGAGTTGGCCGGCCACTGCTGCGCAAGGGAGCCTTATCAGCGTCCCGACATGAGTCATGTGGTGAATGTGCTGGCACCTCTTGTTGAGATTTGGAAGCCTTCAGAAGCAGATGATGATGACATTTATGGCATTGACTTCGATATTACCTTACCTCAAGCACTCAGTAAGTGGAAGGCTATTGAAGGAAGGAGCACCTTGGATGTGtcatcatcctcttcatcaatgcTTACTAGTGGAGATAATACACAGTCTAGCATACCAACTAGGCCTTCTGGTTTTGCTGATTCCTTTACTTCCGCTGATGGAAGATGA 2937 0.4321 MSRFLESVRPHCGCIDRICLQFLTTSRIAIKLQLGWQFKTLRVMVKTHVSFVLWLVVLLFCVGFERAWCQDDVVVMNTLKKAVTEPNDLQWSDADVCKWKHVQCSTMKRVTAIQIGGLSLKGSLPKELAQLSALTRFECMSNGFTGPFPSMPKSLEVLIIHNNNFSSMPGDFFTGMTNLQDVDIGYNPFPKWEIPVGLNDCVSLRDFSAVSAGLVGKIPDFFGKDGPMPGLVSLSLSFNSLDGGLPAALSGSSIEILWVNGQESSGKLNGTLDVLKNMTSLKQIWVHGNSFTGPIPDLSNHDQLFDVSLRDNQLTGVVPPSLTALPALKVVNLTNNLLQGSPPVFKPGVKVDNDLDKGQNSFCTKEPGKPCSPLVDALLSVVEPLGYPPIFADKWTGNDPCRQNWMGIICSSGNISAISFQSMNLTGNISPSFARLTSVTELLLANNGLTGTIPSELISMPLLKKLDVSNNKLYGKVPSFSRDVVLNTDGNPDIGKDIPQAPPGSNSGGKSGGEGKKYNTGAIVGTVVGGFSLLGLGALVFIMYVRKHKHAGKVQSPSAIVVHPRHSGDGNGLKISVAASGASGGGGGGGGTSVFSPTSSVQHVEAGNMVISIQVLREVTNNFSEGNILGRGGFGTVYKGELHDGTKIAVKRMESGMMGEKGLSEFESEIAVLTKVRHRHLVALEGHCLDGKEKLLVYEYMPQGPLSKHLFEWKEEGLQPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKTSFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRRAIDNSQPEENIHLVTWFRRMLLNKDSFGKLIDPTMDVDEEAFTSFRTVAELAGHCCAREPYQRPDMSHVVNVLAPLVEIWKPSEADDDDIYGIDFDITLPQALSKWKAIEGRSTLDVSSSSSSMLTSGDNTQSSIPTRPSGFADSFTSADGR 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1126 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672|GO:0006468
Ssu2g1126 978 Gene3D Phosphorylase Kinase; domain 1 593 700 - -
Ssu2g1126 978 SMART LRR_typ_2 176 201 IPR003591 -
Ssu2g1126 978 SMART LRR_typ_2 153 175 IPR003591 -
Ssu2g1126 978 SMART LRR_typ_2 228 252 IPR003591 -
Ssu2g1126 978 SMART LRR_typ_2 325 347 IPR003591 -
Ssu2g1126 978 SMART LRR_typ_2 436 460 IPR003591 -
Ssu2g1126 978 CDD STKc_IRAK 629 902 - -
Ssu2g1126 978 Pfam Leucine rich repeat N-terminal domain 376 411 IPR013210 -
Ssu2g1126 978 Pfam Leucine rich repeat N-terminal domain 71 105 IPR013210 -
Ssu2g1126 978 MobiDBLite consensus disorder prediction 942 978 - -
Ssu2g1126 978 Gene3D Ribonuclease Inhibitor 374 498 IPR032675 -
Ssu2g1126 978 ProSitePatterns Protein kinases ATP-binding region signature. 629 651 IPR017441 GO:0005524
Ssu2g1126 978 Gene3D Ribonuclease Inhibitor 69 369 IPR032675 -
Ssu2g1126 978 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 47 978 - -
Ssu2g1126 978 SMART serkin_6 623 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1126 978 MobiDBLite consensus disorder prediction 491 513 - -
Ssu2g1126 978 ProSiteProfiles Protein kinase domain profile. 623 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1126 978 SUPERFAMILY Protein kinase-like (PK-like) 599 908 IPR011009 -
Ssu2g1126 978 Gene3D Transferase(Phosphotransferase) domain 1 701 918 - -
Ssu2g1126 978 SUPERFAMILY L domain-like 86 480 - -
Ssu2g1126 978 PANTHER OSJNBA0070M12.3 PROTEIN 47 978 - -
Ssu2g1126 978 Pfam Protein kinase domain 624 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1126 Ssu-Chr2 51380591 51384332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1126 110 905 Receptor kinase-like Gene Family AT5G07280 30.288 2.30e-77 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Ssu2g1126 Pkinase 2.1e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1126 2 51380591 51384332 Ssu2g1126 2 51380591 51384332 ECH