Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1123 ATGCTTGCTCTGCTTCTAGATACCGAATTGAGTTCAACCCAACGAGATTATGCTCAGACTGCTCAAGCATGTGGAAAGGCACTGATAACATTAATAAATGAGGTGCTGGACCGAGCTAAAATTGAAGCGGGCAAGTTAGAGCTGGAGGCTGTTCCATTTGATCTTCGTTCCATACTTGATGAtgtcctttctcttttttctgaGACATCTAGACACAAAGGTTTAGAGCTGGCTGTGTTTGTTTCTGATAAAGTTCCAGATATTGTCATGGGGGATCCTGGGAGATTCagacaaataataacaaatctTGTTGGCAACTCTATTAAATTTACTGAACAAggacatatttttgttaaagtCCATCTAGCGGAAAATAGAAAGTCCATAATGAATGGAAAACACGGGAGTTTTCTCAACGGAGAATCAGACGAAGTTTTCCATATATCTGGTGATTATCATTTCAAAACCTTAAGTGGATGTGAAGCAGCTGATGAACGGAACAGCTGGGATAATTTCAAGCATCTAATCGCCGATGAAGAATATTGCCTTGATTCTTCAAGAGAAACGGCGGCTGCTTGTGAATCTTCTGAGCAAGTCACCTTGAGGGTGTGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCACAGGACAGGGTATTCATGCCTTTTGTGCAGGCCAACAGCTCAACTTCACGAAATTTTGGGGGTACTGGTATTGGATTGAGTATCAGTAAATGTCTGGTTGAACTAATGGGCGGTCAGATAAACTTCATAAGTCGACCCCAGGTTGGCAGCACTTTTTCATTTACTGCAGTTTTTGGAACATTTAAGAAATGTTCTGTTAGTGACAAGAAGAAAAACTTGGAAGATCTTCCTTCAAGTTTTAGAGGGCTGAAAGTCATTGTGGTCGATGGAAAACTTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTAGGGATACTAGTTAAAGTTGCAAATAGCATCAGTAAGGCTCTTGCTTTATGTGGTAAAAGTGGTTCTTTGACATCAGgAATGTTTCAGCCCGGCATTatcatggttgagaaggacaCATGGTTATCCGGAGAGGATGGGATTTTCAATATAAGGAAACTGGACTGGAAACAGAATGGTCATATGTTTAAGATGCCTAAAATAATCCTTCTGGCAACCAATATTAGTAATACTGAATTTGATGAAGCCAAGGCCACGGGTTTCACTGATACTGTGATCATGAAGCCTCTAAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAGTTTTGGGGATGGAGAAGAGGCAGCTAGGGAAAGACATGCCTACTGGTTCTCCCTTTCTACATAGCGTTCTCTGTGGAAAGAAAATCTTGGTGGTTGATGACAATGGGGTGAACCGGAGGGTTGCAGCAGGTGCACTAAAAAAGTTTGGAGCTGATGTGAAGTGTGCTGAAAGTGGCAAAGCTGCGCTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGACGGATTTGAAGCAACCAGTCGAATTCGGAAGATGGAGAGAAAGGTGAATGAGGAGATGAATAATGGGAGGGAGTGGCATGTGCCTATATTGGCCATGACAGCTGATGTGATCCATGCTACATGCGAGGAGTGTGTGAAATGTGGCATGGATGGATATGTCTCAAAGCCATTTGAGGAAGAGAATCTGTATCAGGAAGTTGCAAAGTGTTTCAAATCCAAGACCATCTCAGACTCATGA 1776 0.4077 MLALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSETSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSIKFTEQGHIFVKVHLAENRKSIMNGKHGSFLNGESDEVFHISGDYHFKTLSGCEAADERNSWDNFKHLIADEEYCLDSSRETAAACESSEQVTLRVCVEDTGIGIPFSAQDRVFMPFVQANSSTSRNFGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVFGTFKKCSVSDKKKNLEDLPSSFRGLKVIVVDGKLVRAAVTRYHLKRLGILVKVANSISKALALCGKSGSLTSGMFQPGIIMVEKDTWLSGEDGIFNIRKLDWKQNGHMFKMPKIILLATNISNTEFDEAKATGFTDTVIMKPLRASMVAACLQQVLGMEKRQLGKDMPTGSPFLHSVLCGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDACFMDIQMPEMDGFEATSRIRKMERKVNEEMNNGREWHVPILAMTADVIHATCEECVKCGMDGYVSKPFEEENLYQEVAKCFKSKTISDS 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1123 591 CDD REC_hyHK_CKI1_RcsC-like 457 579 - -
Ssu2g1123 591 Gene3D - 45 277 IPR036890 -
Ssu2g1123 591 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 587 - -
Ssu2g1123 591 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 91 273 IPR003594 -
Ssu2g1123 591 ProSiteProfiles Histidine kinase domain profile. 1 276 IPR005467 -
Ssu2g1123 591 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33 271 IPR036890 -
Ssu2g1123 591 SUPERFAMILY CheY-like 454 583 IPR011006 -
Ssu2g1123 591 ProSiteProfiles Response regulatory domain profile. 300 430 IPR001789 GO:0000160
Ssu2g1123 591 Gene3D - 1 44 - -
Ssu2g1123 591 PRINTS Bacterial sensor protein C-terminal signature 236 254 IPR004358 GO:0016310|GO:0016772
Ssu2g1123 591 PRINTS Bacterial sensor protein C-terminal signature 260 273 IPR004358 GO:0016310|GO:0016772
Ssu2g1123 591 PRINTS Bacterial sensor protein C-terminal signature 219 229 IPR004358 GO:0016310|GO:0016772
Ssu2g1123 591 PRINTS Bacterial sensor protein C-terminal signature 201 215 IPR004358 GO:0016310|GO:0016772
Ssu2g1123 591 SMART HKATPase_4 91 276 IPR003594 -
Ssu2g1123 591 CDD HisKA 1 40 IPR003661 GO:0000155|GO:0007165
Ssu2g1123 591 SUPERFAMILY CheY-like 295 432 IPR011006 -
Ssu2g1123 591 Pfam Response regulator receiver domain 457 579 IPR001789 GO:0000160
Ssu2g1123 591 SMART REC_2 455 579 IPR001789 GO:0000160
Ssu2g1123 591 Gene3D - 450 590 - -
Ssu2g1123 591 Gene3D - 294 435 - -
Ssu2g1123 591 PANTHER HISTIDINE KINASE 4 1 587 - -
Ssu2g1123 591 CDD HATPase_EvgS-ArcB-TorS-like 96 274 - -
Ssu2g1123 591 ProSiteProfiles Response regulatory domain profile. 456 583 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1123 Ssu-Chr2 51252126 51256020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1123 1 591 Histidine Kinase Gene Family AT2G01830 66.333 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu2g1123 HATPase_c 2.2e-30 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1123 2 51252126 51256020 Ssu2g1123 2 51252126 51256020 ECH