Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1119 ATGATGACTCCAAACTTGAACCTGAAACCTGAAGATGATTTAAAAGTCCGCGGCCAAGTAGGTTCCAATATATTGTTACAAGAAACATCGCACGATCATACCAAGGACAACACCACCACATCTTCCGGTCTTACAAAGGCTGATCCTGGTCCAGGTTCTGTTTCCCTTGGCTTGACCCTCAACTTCCCTTTCACTGATGAAGAGTTGAAAGGCAcaagtcatactaacagtgaAGTGGGAGCCGAAACTAATGCCTCAGCATCAGCAATTCCTAGagttttctcttgtaattattgtaGGCGAAAATTCTTTAGCTCGCAGGCATTAGGTGGCCATCAGAATGCTCATAAAAGGGAGAGGACAATGGCAAAGCGCGCAATGCAAATGGGGACGTTCACCGAAAGGTACACAAGCCTAGCATCTCTGCCTCTTCATGGTTCCACTTTTCGGTCGCTTGGACTCGAAGCTCATGCTGCAATGCTCCAAGGACATGTGCATTCAGTGAGGGCTCCTGATATGAGAGCTGCAGCAAAATTCGGGAAAGACTGTTTTAGGACGCCTGATCTTTGCGGAAGATGA 579 0.4439 MMTPNLNLKPEDDLKVRGQVGSNILLQETSHDHTKDNTTTSSGLTKADPGPGSVSLGLTLNFPFTDEELKGTSHTNSEVGAETNASASAIPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMQMGTFTERYTSLASLPLHGSTFRSLGLEAHAAMLQGHVHSVRAPDMRAAAKFGKDCFRTPDLCGR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1119 192 Gene3D Classic Zinc Finger 74 141 - -
Ssu2g1119 192 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Ssu2g1119 192 PANTHER ZINC FINGER PROTEIN 3-RELATED 7 187 - -
Ssu2g1119 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Ssu2g1119 192 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Ssu2g1119 192 PANTHER ZINC FINGER PROTEIN JAGGED 7 187 IPR045320 GO:0003700
Ssu2g1119 192 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1119 Ssu-Chr2 51160597 51161175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1119 41 171 C2H2 Transcription Factor Family AT1G24625 47.328 8.80e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g1119 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1119 2 51160597 51161175 Ssu2g1119 2 51160597 51161175 ECH