Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1118 ATGATTGGAGGCAAAGATCTTGTTCCCATTGGCGTTGACTCTGAGGGGGAGAACTCAAGGAGCAAGCTGTCGCAGCAGCATCATGATTTTGCTCATGGCAAGGGACACCCACACGAAAAAAAACCGAGTTACCCAGAGAACAAGGTTGGTGTTGATGATTTTCAGTCAACACCCGCCAAAATTGGCACTTCTGGGTTGCAAGAGTTGACCCTCAGCTACCTCTGTGACAACCCAAAATTGGGTCTTGTTGAGAGAGAGGTTGGTGATAGAGGCTTGGTGAAGGGCAAAGAAGTTGTGGTTCATGGGAATTCAGATCAAGATGAGAAATATCAACGTGGGTTGGGTCTAGTGGAAGGGATTAGTCTCTCACAACGTACCGAATCAAGGTTTGAATCCTCGCCAGTAGAGGTCACGTTCGGTGCCAGACAATACCTCGAACAGGATTGCTTTCAAAAGAGGATACCTGTcggaaaccaaaaaaaagatcaaaatgagAAATGGGTAGAGAGGGATTTCTTAAGTTTGAGTGAAACTAGGGAGAATTCTTCAAAGAGATCCATTGAGGAAGAGTGTGAGAGGGAGAAGAATAGTGGCAAGAAGAAGCAGAAGCTTGAGACTCTTAGTCTTTCTCTTGCTTTGCCTGATGTGTCACTCTCTCTCACAGCCTCAAACGCTTTGCAAAATGGTGACCAACTTGTTAGGCCAAAGCCTAGTAAGCCATCCACAAGGACCACAACTACGATCAATTCATGTTCAAATGATTACACAACAGCTTCTTTGTCTCACTCTTACTCTCACCCTTTCTCACACAACCCAAGTTGCTCACTTACCCGTAATTCAACCGAGAATTTTGAGTATTCAGTCAGCAAGGATGATCAAATTTGGCACTGTGGGGAGGGGACTAATGGGTCGGTTCATAGCAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGGCCAATCATTCTTTTATGCAAGGGAATAGTCAGTATAAGGCTACTAGCTCAGATAACCAATCTTTTTTCCCTTCAGAATTGCCTGCAAGAGTGAGATTTGAAGCACAGTCAGAGGGCTCAAGGGGAAAGAATTCTGAGAATCTAAGAGGCTTGGAAGATGTGGATGGTGGGAAGATGAAGAAGTTTTCTACATCAGAGATAGTTCTAAGAGAAATTGTGTCCGAGTCTATCCAGGCCGTGGCATTGACATTTCAGGAGTTCACTGATGAAGTCATAGCTTCAATTAAGGAACACTTGAAAGGTCTCATTGACATGCCAGAGAAGAAAGGGGAATTAGAGAGCCTCCAGAATCGGCTTGACCGAAGATCTGACCTCACCAGAGAGGCTCTTTCAAAGTGTCATAAGGAGCAGCTAGAGATTTTGGTTGCTATCAAAATGGGGCTTGGGAGTTTCTTGTCTGGTAAGTTCCAATTCTTGGAGATGGTGGAGGTTTTCTTGTATATTAGATGTAGAAATGTGAACTGCAAGAGCTTACTGCCTGTTGATGACTGTGACTGCAAGATGTGTTCTGGAAATAAGGGGTTTTGCAGTTCTTGCATGTGTCCTGTTTGTATGAACTTTGATTGTGCAAGTAACACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGTCATGCTGCCTGTGGCATTCAGAGGAATCTAATCAAACCTGGGCCTAGCTTGAAGGGTCCTTCTGGGACCTCTGAGGTGCAGTTTCATTGTAGCGGCTGTGGTCATGCTTCGGAAATGTTTGGCTTTGTTAAAGATGTCTTTGTGTGTTGTGCCAAGGATTGGGGCCTAGAAACCTTGATGAAAGAGCTTGCCTGTGTGAGGAGGATTTTCTGGAGAAGCGAAGATCGCAAAGGGAAGGAATTGCATACTAAAACAGATGATATGCTGTTAAAGCTTCAAGCTAAACTGGTTTCTCCTTTGGATGCCAGCAACTACATCATGCAGTTTTTCAGCTATGCAGATGGCATGTCAGACATTCCCGTTTCTGGTATATCCTCAGAGGATTTGTCAACATCTAAGGCTAACCTTACAATGGACACAACATCATCTCTTCCACAATCTACTTCTCTAAGACCAAAATATTCTTATGACATGAGCTACTCTAGATCAAATGAGCTTCAACAGAAAGACCTCAAGGCCTCCCTCTTCAGTGAGCATAAAAATGAGCCTGATTTCCACTTAGAGTCTTTATTAAGGAAAGGAGGGCCTGAAAGCTTGGAGGGCATCGTGCGAATAAAAGAGGCCGAAGCCAGAATGTTCCAAAGCAAGGCAGATGAGGCGAGGAGAGAGGCAGAAGGGTTCCAGAAGATGATCACGACAAAGGCTGCACAGATGGAAGAAGAGTATGCTGAAAGGCTTGGCAAGCTTTCCTTGCATGAAGCAGAggaaaggaggaagaagaaatttGAGGAACTCAATGTCTTGCAAAATTCCCACTATGATTACTTCAACATGAAAAGTAGAATGCAAGATGAGATTCATGGTTTGTTGAAGAGAATGGAAGCAACAAAGCAGTAA 2529 0.4346 MIGGKDLVPIGVDSEGENSRSKLSQQHHDFAHGKGHPHEKKPSYPENKVGVDDFQSTPAKIGTSGLQELTLSYLCDNPKLGLVEREVGDRGLVKGKEVVVHGNSDQDEKYQRGLGLVEGISLSQRTESRFESSPVEVTFGARQYLEQDCFQKRIPVGNQKKDQNEKWVERDFLSLSETRENSSKRSIEEECEREKNSGKKKQKLETLSLSLALPDVSLSLTASNALQNGDQLVRPKPSKPSTRTTTTINSCSNDYTTASLSHSYSHPFSHNPSCSLTRNSTENFEYSVSKDDQIWHCGEGTNGSVHSRFKPIGDGVALANHSFMQGNSQYKATSSDNQSFFPSELPARVRFEAQSEGSRGKNSENLRGLEDVDGGKMKKFSTSEIVLREIVSESIQAVALTFQEFTDEVIASIKEHLKGLIDMPEKKGELESLQNRLDRRSDLTREALSKCHKEQLEILVAIKMGLGSFLSGKFQFLEMVEVFLYIRCRNVNCKSLLPVDDCDCKMCSGNKGFCSSCMCPVCMNFDCASNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEVQFHCSGCGHASEMFGFVKDVFVCCAKDWGLETLMKELACVRRIFWRSEDRKGKELHTKTDDMLLKLQAKLVSPLDASNYIMQFFSYADGMSDIPVSGISSEDLSTSKANLTMDTTSSLPQSTSLRPKYSYDMSYSRSNELQQKDLKASLFSEHKNEPDFHLESLLRKGGPESLEGIVRIKEAEARMFQSKADEARREAEGFQKMITTKAAQMEEEYAERLGKLSLHEAEERRKKKFEELNVLQNSHYDYFNMKSRMQDEIHGLLKRMEATKQ 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1118 842 Coils Coil 823 842 - -
Ssu2g1118 842 CDD PHD_OBE1_like 518 577 - -
Ssu2g1118 842 Coils Coil 795 815 - -
Ssu2g1118 842 MobiDBLite consensus disorder prediction 1 56 - -
Ssu2g1118 842 Coils Coil 747 767 - -
Ssu2g1118 842 PANTHER PROTEIN OBERON 3 2 842 - -
Ssu2g1118 842 MobiDBLite consensus disorder prediction 178 199 - -
Ssu2g1118 842 MobiDBLite consensus disorder prediction 20 47 - -
Ssu2g1118 842 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 780 802 IPR004082 -
Ssu2g1118 842 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 479 500 IPR004082 -
Ssu2g1118 842 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 401 423 IPR004082 -
Ssu2g1118 842 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 525 545 IPR004082 -
Ssu2g1118 842 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 598 617 IPR004082 -
Ssu2g1118 842 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 440 455 IPR004082 -
Ssu2g1118 842 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 741 761 IPR004082 -
Ssu2g1118 842 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 2 842 IPR004082 -
Ssu2g1118 842 Pfam Coiled-coil region of Oberon 708 834 IPR032535 -
Ssu2g1118 842 Pfam PHD - plant homeodomain finger protein 488 612 IPR032881 -
Ssu2g1118 842 MobiDBLite consensus disorder prediction 352 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1118 Ssu-Chr2 51144941 51148541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1118 482 723 PHD Gene Family AT5G57380 26.829 4.39e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1118 2 51144941 51148541 Ssu2g1118 2 51144941 51148541 ECH