Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1115 ATGAGTTCCTTGGGTACCTCAGGTTTGGCACACTTGTTTGGCGTCTTAGCCTTCATCCTCTTGCTCGTTTGGTTGTTGCATTACCGCGAAGGGATTGACTATGATTCAGACAATGGATATCGCGTCTTCAATGTTCACCCTTTATTGATGTTCGCGGGGTTCATTTTCCTTGCTGGCGAAGCTATGATGGCATTCCAAACGGTACGAGGCGAAAGGAAAATCAAGAAGTTCGTTCACATGACACTGCATTTGATTGCTATAGTTCTTGGTATTGTTGGTTTGAGAGCCGTTTTCAAGTTCCACGATATGGCAAACATTGCCAACGTTTACAGCCTCCATTCATGGATCGGCATTGGCACCTTCTGCTTGTTTGGATTGCAGTGGGTTTTTGGTTTCGTTATGTTCATGCTTCAAGGAGCTCCAGCTACAACAAGAGCCAAAGTGCTACCATGGCACAAAGTTGCTGGTAGAGCACTGTTGTTCATGGCAGTGTGTGCTGCTGAAACAGGATTGATGGAGAAGTCTAGCTTCTTAGGACTGAAGCATCAGAGAGAGTCTCATTTGGTCAACTTCACGGGTCTTGCAATTCTCTTGTTTGGAGTTTTTGTAAACATTTCTGTTGGTTACTCTTAG 633 0.4471 MSSLGTSGLAHLFGVLAFILLLVWLLHYREGIDYDSDNGYRVFNVHPLLMFAGFIFLAGEAMMAFQTVRGERKIKKFVHMTLHLIAIVLGIVGLRAVFKFHDMANIANVYSLHSWIGIGTFCLFGLQWVFGFVMFMLQGAPATTRAKVLPWHKVAGRALLFMAVCAAETGLMEKSSFLGLKHQRESHLVNFTGLAILLFGVFVNISVGYS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1115 210 Gene3D - 2 209 - -
Ssu2g1115 210 ProSiteProfiles Cytochrome b561 domain profile. 9 208 IPR006593 -
Ssu2g1115 210 CDD Cyt_b561_ACYB-1_like 36 179 - -
Ssu2g1115 210 Pfam Eukaryotic cytochrome b561 45 177 IPR006593 -
Ssu2g1115 210 PANTHER CYTOCHROME B561-RELATED 5 208 IPR043205 GO:0016491
Ssu2g1115 210 PANTHER TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 3-RELATED 5 208 - -
Ssu2g1115 210 SMART 561_7 45 171 IPR006593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1115 Ssu-Chr2 51118207 51121509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1115 2 207 Chloroplast and Mitochondria Gene Families AT1G14730 54.369 7.00e-79 234
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1115 2 51118207 51121509 Ssu2g1115 2 51118207 51121509 ECH