Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1114 ATGGGAGGGTGTCACATGGGGTTCCTCTTGTGTTGTTCTCTGCTTTTTGCTGTCATGGCTTCTTCTGGGTCACTCAGAAACTTGCCCATCATAGCCTTTGAGGATGGCTACACACCCTTGTTTGGGGACCATAATTTGGCCATCCATAGGGATGGCAAATCAGTTCACCTTTCACTTGATGAAAGAACAGGTTCTGGATTTGTGTCTCATGACCTTTACCTTCACGGGTATTTCAGTGCTTCGATCAAGTTGCCTGCTGATTACACTGCTGGAGTTGTGGTTGCATTTTATATGTCAAATGGTGACATGTTCCAGAAGAACCATGATGAGATAGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGCAATGGAAGTACCAGcattggtagagaggaaagataTGGCCTATGGTTTGATCCTTCTGAGGATTTCCATCAGTACAGTATTCTCTGGACAGATTCTAAGATCATATTTTATGTGGATGATGTTCCTATTAGGGAAGTTAAGAGAACAGAATCTATGGGAGGAGATTTCCCCTCAAAGCCAATGACTTTGTATGCCACCATATGGGATGCATCTGATTGGGCAACCAATGGAGGCAAATACAGAGTAAATTACAAGTATGCACCCTATGTTGCTGAGTTCTCTGACCTTGTCCTGCATGGTTGTGCAGTTGATCCCATTGAGCATGTGGCCAAGTGTGACAATGCACAAGGTTCTGAGGCAGTTCCTTCTGGTGTCACCCCAGTACAAAGAACCAAAATGGGAAACTTCAGGTTGAAACACATGACATACTCTTACTGCTATGACACAGTCAGATACAAAGTCCCTCCTCCAGAGTGTGTCATCAACCCCCAAGAAGCTGAAAGGCTAAGAAAATTTGATCCTGTCACGTTCGGCAATGGCCGGCGCCACCATGGAAAACGACACCACCGCAATAGAGGAAGCCAGAAAGAGGCTGCGGCTTCATTTTAA 1005 0.4408 MGGCHMGFLLCCSLLFAVMASSGSLRNLPIIAFEDGYTPLFGDHNLAIHRDGKSVHLSLDERTGSGFVSHDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDMFQKNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTSIGREERYGLWFDPSEDFHQYSILWTDSKIIFYVDDVPIREVKRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPIEHVAKCDNAQGSEAVPSGVTPVQRTKMGNFRLKHMTYSYCYDTVRYKVPPPECVINPQEAERLRKFDPVTFGNGRRHHGKRHHRNRGSQKEAAASF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1114 334 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 295 IPR013320 -
Ssu2g1114 334 MobiDBLite consensus disorder prediction 307 334 - -
Ssu2g1114 334 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 8 312 - -
Ssu2g1114 334 CDD GH16_XET 31 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu2g1114 334 Pfam Glycosyl hydrolases family 16 35 217 IPR000757 GO:0004553|GO:0005975
Ssu2g1114 334 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 8 312 IPR044791 GO:0004553
Ssu2g1114 334 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 255 291 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Ssu2g1114 334 PIRSF EndGlu_transf 3 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu2g1114 334 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 225 IPR000757 GO:0004553|GO:0005975
Ssu2g1114 334 Gene3D - 20 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1114 Ssu-Chr2 51064635 51067018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1114 6 324 Glycoside Hydrolase AT1G14720 68.421 5.81e-169 471
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1114 2 51064635 51067018 Ssu2g1114 2 51064635 51067018 ECH