Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1109 ATGTCACTTTGGCTACATGATCCTGCAATTAGGGATGTTAAGGTAGTAAGAAAAGCCTTAACCGCCTCGGTTGTTGATAATCAAGCTATAATAGAAGTGATATGTTCTCGTACCCCATCACAATTAAGGCGATTGAAAGAAGTTTATCTGTCAACTTATCATTCCTATCTTGAGCATGGCATTGAAAGTCAAACCAGTGGTGATCACAAAAAGTTGTTGCTTGCTTATGTAAGTACACCACGTTATGAAGGCCCAGAGTTAGACCTTGTAATAGTACAGCAGGATGCAGAACAACTATATAAATCAGGGGAGAAAAGGTTAGGAACTGATGAGAAGATGTTCATAAagatttttagtgaaaaaagcAGCACACATTTGGCTGCAATCAACTCTGCTTACATAGCTTCATATGGACACTCACTAGAAAAGGcaataaagaaagaaacatcTGGCTCTTTTGAGAGTGCCCTCTTGACCATACTACATTGTGCAACGGACCCTGCTATGTACTTTGCCAAGATTCTACGCAAGTCAATGAAGGGAGTGGGAACTGATGATAGTAGACTAATAAGGGTAATTGTGACAAGGACTGAGATAGACATGCAACTTATAAAAGTAgcatattataagaaatatggAAAGCCATTAACCCATGTTGTTCGTTCAGACACATCAGGCCATTATAAAGATTTTCTTCTAAATCTTTTAGGTTCTGATTATTAG 723 0.3596 MSLWLHDPAIRDVKVVRKALTASVVDNQAIIEVICSRTPSQLRRLKEVYLSTYHSYLEHGIESQTSGDHKKLLLAYVSTPRYEGPELDLVIVQQDAEQLYKSGEKRLGTDEKMFIKIFSEKSSTHLAAINSAYIASYGHSLEKAIKKETSGSFESALLTILHCATDPAMYFAKILRKSMKGVGTDDSRLIRVIVTRTEIDMQLIKVAYYKKYGKPLTHVVRSDTSGHYKDFLLNLLGSDY 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1109 240 PRINTS Annexin family signature 179 199 IPR001464 GO:0005509|GO:0005544
Ssu2g1109 240 PRINTS Annexin family signature 16 37 IPR001464 GO:0005509|GO:0005544
Ssu2g1109 240 PRINTS Annexin family signature 99 125 IPR001464 GO:0005509|GO:0005544
Ssu2g1109 240 PRINTS Annexin family signature 223 236 IPR001464 GO:0005509|GO:0005544
Ssu2g1109 240 Pfam Annexin 170 235 IPR018502 GO:0005509|GO:0005544
Ssu2g1109 240 Pfam Annexin 12 75 IPR018502 GO:0005509|GO:0005544
Ssu2g1109 240 Pfam Annexin 94 160 IPR018502 GO:0005509|GO:0005544
Ssu2g1109 240 Gene3D Annexin 167 239 IPR037104 GO:0005509|GO:0005544
Ssu2g1109 240 ProSitePatterns Annexin repeat signature. 183 235 IPR018252 GO:0005509|GO:0005544
Ssu2g1109 240 ProSiteProfiles Annexin repeat profile. 166 237 IPR018502 GO:0005509|GO:0005544
Ssu2g1109 240 PANTHER ANNEXIN 1 240 - -
Ssu2g1109 240 Gene3D Annexin 81 166 IPR037104 GO:0005509|GO:0005544
Ssu2g1109 240 ProSiteProfiles Annexin repeat profile. 90 162 IPR018502 GO:0005509|GO:0005544
Ssu2g1109 240 PANTHER ANNEXIN 1 240 - -
Ssu2g1109 240 ProSiteProfiles Annexin repeat profile. 7 78 IPR018502 GO:0005509|GO:0005544
Ssu2g1109 240 SMART annex3 183 235 IPR018502 GO:0005509|GO:0005544
Ssu2g1109 240 SMART annex3 108 160 IPR018502 GO:0005509|GO:0005544
Ssu2g1109 240 SMART annex3 25 76 IPR018502 GO:0005509|GO:0005544
Ssu2g1109 240 SUPERFAMILY Annexin 1 239 IPR037104 GO:0005509|GO:0005544
Ssu2g1109 240 Gene3D Annexin 7 77 IPR037104 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1109 Ssu-Chr2 50954882 50958452 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1109 2 50954882 50958452 Ssu2g1109 2 50954882 50958452 ECH