Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00347 ATGAAACCAAACTTTGATCTTGAAGTTGAGGCATATGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATGTGTCTATTCAAGAAACCTCTATAGGTCCCTGTAGTGACAGCCTCACCAACATTTCCAACACCACAAATCTAAAAGGGATTCATCCTAATTCAGATGCTATTTCACTTGACTTAACTCTCAACTTCAAGAATAGTGAGCCAGGGGGAAGAGATTCAATAGGATTCTCATTCTCAAGCACTAGTGAGAGCAGCAATGAACCTGCATCTCAAACTACAGCAGCGACCATACCACGAGTCTTCTCTTGCAATTACTGTAAGCGCAAATTTTTCAGCTCTCAGGCTCTTGGTGGACATCAGAATGCACACAAGAGAGAAAGAACATTAGCAAAAAGGGCTTTGAGAATGGGATTTTTCTCTGAAAGGTATGCCAATCTAGCATCTCTCCCTCTGCATGGTTCTTTCAGGTCCTTAGGAATAAAGGCACACTCTTCACTGCACCATGGTTTCTCACCAACAATGAGGCCTCCTGAGATAAAAAACAATGCAAGATTTGATCAAGGGTATCTTGGCCTCCCAATATTCTTGGAGGATGATGAGTCAGATTTGTTGTGGCCGGGTAGTTTTCGTCAGGTTGTGGAGGCAGGTGATAGTCATCAGAATTTCATAATGACTGGAAGTTCAGATTTGAGTTTTACTGGGGTTAATCCACCTGTAGACACAGAGAACTCAACACCAGATTTGACTTTGAAACTTTGA 774 0.4212 MKPNFDLEVEAYAEYESEVSSQVASNVSIQETSIGPCSDSLTNISNTTNLKGIHPNSDAISLDLTLNFKNSEPGGRDSIGFSFSSTSESSNEPASQTTAATIPRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKRALRMGFFSERYANLASLPLHGSFRSLGIKAHSSLHHGFSPTMRPPEIKNNARFDQGYLGLPIFLEDDESDLLWPGSFRQVVEAGDSHQNFIMTGSSDLSFTGVNPPVDTENSTPDLTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00347 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Spst8g00347 257 Gene3D Classic Zinc Finger 84 149 - -
Spst8g00347 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 48 180 IPR044246 GO:0009788
Spst8g00347 257 FunFam Zinc finger protein 2 83 152 - -
Spst8g00347 257 MobiDBLite consensus disorder prediction 238 257 - -
Spst8g00347 257 MobiDBLite consensus disorder prediction 79 98 - -
Spst8g00347 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Spst8g00347 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00347 Spst-Chr8 3147692 3148465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00347 88 257 C2H2 Transcription Factor Family AT1G66140 51.741 4.78e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst8g00347 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00347 8 3147692 3148465 Spst8g00347 8 3147692 3148465 ECH
Spst8g00347 8 3147692 3148465 Spst1g02289 1 31616776 31617564 PCT