Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00345 ATGGTTTTGTCATGGACCAGAGGGAGAGTGTTCCGGCGTGCCCGGAAGGGGAAAGAGTTGAATTCCGGTGGCGATTTGGAGATAGAGATCGCGATCCCCACCCACTTCCGGTGCCCAGTAACTTTGGACATGATGAAGGACCCTGTGACGGTGTCCACGGGGATAACCTACGACAGAGATAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACGTGCCCGGTTACGAAGACGGAGTTGACCAGCTTTGAGATGATCCCGAACCACGCCATTAGGAGGATGATTCAGGATTGGTGCGTAGAGCACCGTTCCTACGGGATCGAACGGATCCCCACTCCTCGGATCCCGGTGACCCCATACGAGGTTACTGACACATGTACGAGGGTCCTGTCGGCTGCGCAGCACGGGGACGAGAACAAGTGTGTGGAGTTGGTGAGGAAGATTAAGGCGTGGGGGAAGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGTCAACGGTGCTGCTCTAGCACTAGCTAATGCGTTTAACATTTTCTCACGTGGGGTGGTTGAAAAGAACGTGGTTGTGTTGGATGAGATTCTGGGGGCTTTGACGTGGATGCGTCCTCTTTCTGAAGAGGGTAGATCGGTGTTGGGGTCCGTGAATTCTATTGGTTGCATGGTTTGGTTCATGAATGGTAAACAATTGGCGACAAGGCAGAACGCTGCTTTGTTGCTTAAGGAAATGCGTGTTGAGGCTTTGGTGAAATGTGAAAGAGTTTTTGAAGCTTTGGTTAACATGGTTAAGGAGCCTGTTGGGAGTGCTTCCACCAAGGCATGTTTGTCAACGATTTTTAAGTTGGTTAATTCTTCAGGGAGTAATAGAGGTGTGACTTGCGAGAGATTCGTGGAGTTGGGGTTGGTTTCGGTCTTGTTGGAGGTTCTTGTTGATGCGGAGAGAGGGGTGTGTGAGAAGGCTTTGGGGGTGTTGGATTGTCTTTGTGATTGTAAACAAGGGGTGGAGATGGCTAAAAGTAATGCTTTGACTTTGCCTCTTGTGATCAAGAAGCTGTTGAGGGTGTCCGAATTGAGTTCCAGCTTTGCGGTTTCGGTTCTCTGGAAGATTTGTGACAAGACAGAAGAAGGTGTGTTGATTGAGGCTCTTCAAATGGGGGTGTTTCATAAACTCCTTGTTTTGTTGCAAGTGGGCTGTGGTGAGGGCACCAAAGAGAAGGCTACGGAGTTATTGAAATTGTTAAATGGTTGCCGGAGCAAAGCTGAGTGTGTTGACTCCTCCTTGGATTTCAAGCATTTGAAGAAACCCTTCTGA 1308 0.4969 MVLSWTRGRVFRRARKGKELNSGGDLEIEIAIPTHFRCPVTLDMMKDPVTVSTGITYDRDSIEKWIESGNRTCPVTKTELTSFEMIPNHAIRRMIQDWCVEHRSYGIERIPTPRIPVTPYEVTDTCTRVLSAAQHGDENKCVELVRKIKAWGKESERNKRCIVVNGAALALANAFNIFSRGVVEKNVVVLDEILGALTWMRPLSEEGRSVLGSVNSIGCMVWFMNGKQLATRQNAALLLKEMRVEALVKCERVFEALVNMVKEPVGSASTKACLSTIFKLVNSSGSNRGVTCERFVELGLVSVLLEVLVDAERGVCEKALGVLDCLCDCKQGVEMAKSNALTLPLVIKKLLRVSELSSSFAVSVLWKICDKTEEGVLIEALQMGVFHKLLVLLQVGCGEGTKEKATELLKLLNGCRSKAECVDSSLDFKHLKKPF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00345 435 SUPERFAMILY RING/U-box 28 108 - -
Spst8g00345 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Spst8g00345 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Spst8g00345 435 PANTHER WDSAM1 PROTEIN 29 422 IPR045185 GO:0061630
Spst8g00345 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Spst8g00345 435 CDD RING-Ubox_PUB 33 85 IPR045210 -
Spst8g00345 435 SUPERFAMILY ARM repeat 127 411 IPR016024 -
Spst8g00345 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Spst8g00345 435 Gene3D - 126 424 IPR011989 -
Spst8g00345 435 FunFam RING-type E3 ubiquitin transferase 26 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00345 Spst-Chr8 3127909 3129216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00345 27 435 U-box Gene Family AT5G37490 47.002 1.95e-121 358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00345 8 3127909 3129216 Spst8g00345 8 3127909 3129216 ECH
Spst8g00345 8 3127909 3129216 Spst1g02287 1 31601353 31602690 PCT