Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00933 ATGTCCAACACTCTGCACCAACACCAACAAAATCCCTCTCTCGAATCCAAGCGTCTTGATCAGGGTTCCCGCGCTTCCCGCCCTGGCCACAGGAGATCGGTCTCCGCTGGAGCTCCGTTAATCTACTCCGGCGGCGCCTCGCTGCTTCCGAGCGGGAACATCTGCCCGTCGGGGAAGGTCCTCAAACCGCTTCTGCCCTCCCGCGGGCCGAACCGGACCGACGTGCTCGGTTCCGGGACAGTGAACTACGGCCGCGGAAGCATAATGCGCGGGGGTTCTGGCGCCTATCCCGTGCCCTTGCCCGTCGCCGCGTCGCCGCTCACGGTGAAGCGCGCGCTCGGCGGGTCCGATCCCGAGGAGGTGAAGAGGGTCGGGAACGAGCTGTATAGAAGCGGGAACTTCGCGGAGGCGCTGGCATTGTACGATCGCGCTGTGGCCATCTCGCCAGGGAACGCGGCGTGCCGGAGCAATCGCGCAGCTGCGCTCACGGCGCTTGGGAGGCTTGGCGAGGCAGCGAGGGAGTGCCACGAGGCTGTGAAGTTGGACCCTGCTTATGCTAGAGCGCACAAGAGGCTTGCCTCTCTTTATCTAAGGTTTGGGCAGGTTGAGAATTCGCGGCGCCATTTATGTCTCTCTGGGATTCAAGAGGATCAATCTGAGGAGCAGAAGCTGTTGTTGTTGGAGAAGCATTTGAATCGATGTGCTGATTCGCGGAAATTTGGTGATTGGAAGAGGGTACTTAGGGAATTAGAGGCAGCCATTGCTGTTGGAGCAGATTTTTCGCCGCAGATTGTTGCTTGCAAGGCGGAAGCTTATTTAAAACTGCATCAACTTGAGGAAGCTGAATCTAGTCTCCTGAACATTCCAAAGTTGGAAGGCTGTCCTGCAGGAAGTTCTCAAACCAAGTTCTTTGGTATGGTTTGTGAAGCCTATGTTCCTTTTGTGTCTGCTCAGGTTGAGATGGCCTTGGGGAGGTTTGAGAATGCTGTTGTGGCAGTTGAAAAGGCTAGCATGTTGGATTACAGTAATGTTGAAGTTGGTAGGATTGTAAATGTTGTAAAAATGGTGGCAAGAGCTCGTTCAAGGGGCAATGATCTTTTCAGCTCTGGCAAGTTTTCTGAAGCATGTTCTGCTTATGGAGAGGGCCTCAAGTATGATAACTCCAACTATGTTCTATATTGCAATAGGGCAATTTGTTGGTCTAAACTTGGACTGTGGGAACAATCGGTTCAAGACTGCAACCAAGCTCTTAACGTTCAACCAAATTACACCAAGGCTCTTTTCCGCAGGGCTGCCTCAAATACAAAGCTTGAAAGATGGGCAGATGTTGTTAAAGATTACCAAGCCTTAAAACGCGAGCTCCCTAATGACAATGAAGTTACTGAGTCTCTTCGTCGGGCTCAATTAACATTAGAAAAATCTCGGCTAGTGGTATATGGTACCAAGTTTGGAGTGGAAGTTGAAGAAATCTCAGCATTAGACAAATTTAAAGCTGCGATTGCTTCTGCTGGTGTTTTAGTGGTTTATTTCAAAGAGGCATCAAACGAGCTATGTGAGGAAATATCTCCATTCATAAACACGTTGTGTGTTAGATATCCCTCTGTTAAATTTATTAAGGTGGACGCGGATGAGTGTCTTGCAATAGCAAAAACTGAGAGCATAAGAAGTGTTCCAACCTTTAAAATTTATAAAAATGGAGAGAAGGTGAAGGAGATGATCCGGCCAACACATCAGTTATTAGAGGACTCAGTAAGGAGAAGTAGTAGTCTCTAG 1773 0.498 MSNTLHQHQQNPSLESKRLDQGSRASRPGHRRSVSAGAPLIYSGGASLLPSGNICPSGKVLKPLLPSRGPNRTDVLGSGTVNYGRGSIMRGGSGAYPVPLPVAASPLTVKRALGGSDPEEVKRVGNELYRSGNFAEALALYDRAVAISPGNAACRSNRAAALTALGRLGEAARECHEAVKLDPAYARAHKRLASLYLRFGQVENSRRHLCLSGIQEDQSEEQKLLLLEKHLNRCADSRKFGDWKRVLRELEAAIAVGADFSPQIVACKAEAYLKLHQLEEAESSLLNIPKLEGCPAGSSQTKFFGMVCEAYVPFVSAQVEMALGRFENAVVAVEKASMLDYSNVEVGRIVNVVKMVARARSRGNDLFSSGKFSEACSAYGEGLKYDNSNYVLYCNRAICWSKLGLWEQSVQDCNQALNVQPNYTKALFRRAASNTKLERWADVVKDYQALKRELPNDNEVTESLRRAQLTLEKSRLVVYGTKFGVEVEEISALDKFKAAIASAGVLVVYFKEASNELCEEISPFINTLCVRYPSVKFIKVDADECLAIAKTESIRSVPTFKIYKNGEKVKEMIRPTHQLLEDSVRRSSSL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00933 590 MobiDBLite consensus disorder prediction 1 37 - -
Spst5g00933 590 SUPERFAMILY TPR-like 117 343 IPR011990 GO:0005515
Spst5g00933 590 Gene3D Glutaredoxin 478 588 - -
Spst5g00933 590 SMART tpr_5 356 389 IPR019734 GO:0005515
Spst5g00933 590 SMART tpr_5 390 423 IPR019734 GO:0005515
Spst5g00933 590 SMART tpr_5 310 343 IPR019734 GO:0005515
Spst5g00933 590 SMART tpr_5 118 151 IPR019734 GO:0005515
Spst5g00933 590 SMART tpr_5 152 185 IPR019734 GO:0005515
Spst5g00933 590 SMART tpr_5 424 457 IPR019734 GO:0005515
Spst5g00933 590 SUPERFAMILY Thioredoxin-like 399 580 IPR036249 -
Spst5g00933 590 MobiDBLite consensus disorder prediction 1 19 - -
Spst5g00933 590 Gene3D Tetratricopeptide repeat domain 116 476 IPR011990 GO:0005515
Spst5g00933 590 Pfam Thioredoxin 494 575 IPR013766 -
Spst5g00933 590 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 8 585 IPR044534 -
Spst5g00933 590 Pfam Tetratricopeptide repeat 128 192 - -
Spst5g00933 590 CDD TRX_family 496 581 - -
Spst5g00933 590 FunFam TPR repeat-containing thioredoxin TTL4 481 588 - -
Spst5g00933 590 ProSiteProfiles TPR repeat profile. 118 151 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00933 Spst-Chr5 8721707 8724470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00933 130 203 Glycosyltransferase AT3G04240 33.784 1.82e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00933 5 8721707 8724470 Spst5g00933 5 8721707 8724470 ECH
Spst11g00549 11 27479075 27482284 Spst5g00933 5 8721707 8724470 PCT