Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00413 ATGGATCCAAACTTGGTCCAAAGCTACGATTTTGATGTCTGGGATCTCAATGGACACTATAACAACCTTGTCACGGATCCTTTTTTCTCTCCCTCAGATGTGGGCCCACTTGAGTTTTCTCCTAATACAATCTTAAACTCTCACCCGCTTGCTTCATCCTCCGCCTCCATGTCGGCCACGGTGACGGATCCTTCGCTTGAGGAAGACACTGATTTTTCAGAAACCTTCAAGTTCATAAGTCAAATTCTCATGGAAGAGAACTTTGAACAGAAACCGTGCATGTGTTATGACCCTTTGACTCTGCAACATACTGAGAAATCATTCTATGATGCTTTGGAATTGGAACCGTCTCTGCCTCTTTCCCCTAATCAGCACCCGCTTGAGAGCCCCGATGAGAATTCTTCCAACTCCACTACTGACTCTGCCAATTCTCACGACTTGAAGCCTTCTTCACCTAATACACCTGTTTCTGGTGGTGGTGGTGGTGATGCTTTGCATTCCTCTACCCACGCGCCCGATTTGTTTGTTCCTCCGCATGCTTTGACTAAAATTAACGATGGAACCTTGGATTTGGATTCTTCTGTGAGCAAGCTCCTGGCTGAAAATATTTTCAGTGATGCAGAATCTATGTTGCAGTTTAGAAGAGGGTTGGAGGAGGCTAGCAAGTTTCTTCCTCAGAGACCTCAGCTTTTCACTGGGTTGGAGAGCACCGCGGTTTCTGCGGAACCAAAGGTAGGAGGGGCGTTAACTGTGAAGGCGGAGAATTCGATTAGGGTGAAGAGTAGAAAAAATCACGCTCGCCAAGATGATGAAGAAGAAAGAAGCAGCAAACATTCTGAGGTTTGTGTTGAGGAGGAGACTGAAATATCTGAAATATTTGACAAGGTGTTGCTCAGTGTTGAAAATGTGCCACTGTGTGCTGGGAAGAATGGATCTGGGGCAGTTGGAGATAGTAACGCAAAGCTGAGTGAGCAGCCCCCTTCGGTTGATGGAGGGAAGGTTCGTTCCAAGAGGCAAGGGAAGAAGAATGAAACGGTGGATTTGAGGACCCTTTTGGTTCTGTGTGCGCAAGCCGCGTCTGCCAGTGACAACAGAACTGCTAATGAACTATTGAAGCAGATTAGGCAGCATTCTTCTGCCTTGGGTGATTCCTCACAAAGGTTGGCTCATTACGTAGCCAATGCCTTGGAGGCTCGCTTGGTTGGTGCTGGAACTGGAACACAAATATTTTATATGAGCTACAAGAACTTCACTACTACTGATTACCTGAAAGCTTACCAAGTTTTCATATCTGCCTGTCCTTTCAAAAAGTTTGCACATTTCTTTGCAAACAAAATGATTATGAAAACAGCAGAAAATGCAGAAACTCTTCATATTATTGACTTTGGTATCCTGTACGGTTTCCAGTGGCCAATTCTTATCAAGTTTTTATCAAGTAGAGTTGGAGGACCTCCCAAGCTGCGCATCACAGGAATAGAGTATCCCCAACCCGGCTTTCGCCCATCTGAAAGAATAGAGGAGACTGGTCGCCGTCTAGCTATGTATTGCAAGCGATTCAATGTTCCCTTTGAGTACAAGGCCATACCATCAAGAAACTGGGAAACCATTCAAATTGAAGACCTTAAGATTGAGAGGAATGAGGTGCTTGCTGTGAACTGTCTGGTAAGGTTTAAGAATTTGCTTGATGAATCAATTGAAGTGAGCAGTCCCAAAAATGCTGTTCTGAATTTAATCAGGAAGATGAATCCGCATATCTTTGTTCACTCCGTGGTCAATGGATCTTATAATGCCCCTTTCTTTGTCACCCGCTTCAGGGAGGCACTGTTCCATTATTCTTCAATTTATGATATGTTTGATACCCTCATATCCCGTGAAAATGAATGGAGGTTATTGCTTGAGAGGGAATTTTTGGGTCGGGAGATCATGAATGTTGTAGCATGTGAAGCTCTTGAGAGGGTTGAGAGGCCAGAGACATACAAACAATGGCAGGCTAGGAATACTAGAGCTGGTTTTAGGCAGCTCCCACTGGACAAGGAGTTAATGGCCAAATTTAGGGGCAAGTTAAGGGAATGGTACCACAAGGATTTTGTCTTTGATGAAGATGGCGGCTGGATGCTTCAAGGTTGGAAGGGTCGTATTTTGTATGCTTCATCTTGTTGGGTGCCAGCATAA 2172 0.4471 MDPNLVQSYDFDVWDLNGHYNNLVTDPFFSPSDVGPLEFSPNTILNSHPLASSSASMSATVTDPSLEEDTDFSETFKFISQILMEENFEQKPCMCYDPLTLQHTEKSFYDALELEPSLPLSPNQHPLESPDENSSNSTTDSANSHDLKPSSPNTPVSGGGGGDALHSSTHAPDLFVPPHALTKINDGTLDLDSSVSKLLAENIFSDAESMLQFRRGLEEASKFLPQRPQLFTGLESTAVSAEPKVGGALTVKAENSIRVKSRKNHARQDDEEERSSKHSEVCVEEETEISEIFDKVLLSVENVPLCAGKNGSGAVGDSNAKLSEQPPSVDGGKVRSKRQGKKNETVDLRTLLVLCAQAASASDNRTANELLKQIRQHSSALGDSSQRLAHYVANALEARLVGAGTGTQIFYMSYKNFTTTDYLKAYQVFISACPFKKFAHFFANKMIMKTAENAETLHIIDFGILYGFQWPILIKFLSSRVGGPPKLRITGIEYPQPGFRPSERIEETGRRLAMYCKRFNVPFEYKAIPSRNWETIQIEDLKIERNEVLAVNCLVRFKNLLDESIEVSSPKNAVLNLIRKMNPHIFVHSVVNGSYNAPFFVTRFREALFHYSSIYDMFDTLISRENEWRLLLEREFLGREIMNVVACEALERVERPETYKQWQARNTRAGFRQLPLDKELMAKFRGKLREWYHKDFVFDEDGGWMLQGWKGRILYASSCWVPA 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00413 723 MobiDBLite consensus disorder prediction 122 157 - -
Spst5g00413 723 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 273 716 IPR005202 -
Spst5g00413 723 MobiDBLite consensus disorder prediction 260 279 - -
Spst5g00413 723 MobiDBLite consensus disorder prediction 312 342 - -
Spst5g00413 723 Pfam GRAS domain family 348 720 IPR005202 -
Spst5g00413 723 MobiDBLite consensus disorder prediction 116 171 - -
Spst5g00413 723 ProSiteProfiles GRAS family profile. 339 721 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00413 Spst-Chr5 3296365 3298536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00413 75 723 GRAS Transcription Factor Family AT1G07530 50.362 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst5g00413 GRAS 3.6e-112 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00413 5 3296365 3298536 Spst2g02315 2 22496722 22498773 PCT
Spst2g02316 2 22513820 22516521 Spst5g00413 5 3296365 3298536 PCT