Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03308 ATGGGTGCCATCAATTGCATCTCAAACCAAACCAAACCAAACCAAGAAGGCGACACACGCAACAAAACCCTAGAACACATGGAGTCCCTGAGCAAAGCCTCATTCCTCTTACTCCCTCTCTTGTTGCTTTCCCTGTTCAGACATTCCCATGGTGCAGGAATCGCTGTGTACTGGGGTCAAAACGGTGGAGAAGGCACCTTAGCAGATACTTGCAACACACAAAACTTCCAATTTGTGAACATAGCTTTTTTGTCCACTTTTGGCAATGGCCAAACCCCTCAACTGAACCTTGCAGGCCACTGTGACCCCCTCAACAATGGGTGCACAGGGTTGAGCAGTGACATCACAACTTGCCAAAACGGTGGCGTCAAAGTGTTGCTCTCCCTTGGAGGTAGTGCTGGAAGCTACTCCCTCAACTCAGCTGCGGAAGCCACTCAACTTGCAACCTACCTTTGGAACAATTTTCTTGGAGGACAATCTGATTCAAGACCATTAGGTGATGCAATATTGGATGGCATTGACTTTGACATTGAGTCTGGTGGGGGAGAACATTGGGATGAACTAGTGAAGGCACTGAATGACTTAAGTTCCCAAAGAAAGGTGTACTTGTCTGCAGCCCCACAGTGCATAATCCCTGATCAACACTTGAATTCTGCCATCCAAACTGGACTTTTTGACTATGTGTGGGTTCAGTTCTACAACAATCCTTCGTGCCAATACTCCAGTGGAAATACCAACGACTTGATCAATTCATGGAACCAATGGATCACTGTGCCAGCCACGCAAGTCTTCATGGGACTTCCTGCATCAGAAGCAGCTGCTCCAAGCGGTGGTTTTATCCCTTCTGATGTGTTAATTTCTCAGGTTCTTCCTCAGATAAAACAGTCTTCAAAGTATGGAGGAATCATGCTCTGGGATAGATTCAATGATATCCAGAATAGTTATAGCAACGCTATTGTTGGAAGCGTTAATTAG 975 0.4605 MGAINCISNQTKPNQEGDTRNKTLEHMESLSKASFLLLPLLLLSLFRHSHGAGIAVYWGQNGGEGTLADTCNTQNFQFVNIAFLSTFGNGQTPQLNLAGHCDPLNNGCTGLSSDITTCQNGGVKVLLSLGGSAGSYSLNSAAEATQLATYLWNNFLGGQSDSRPLGDAILDGIDFDIESGGGEHWDELVKALNDLSSQRKVYLSAAPQCIIPDQHLNSAIQTGLFDYVWVQFYNNPSCQYSSGNTNDLINSWNQWITVPATQVFMGLPASEAAAPSGGFIPSDVLISQVLPQIKQSSKYGGIMLWDRFNDIQNSYSNAIVGSVN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03308 324 CDD GH18_hevamine_XipI_class_III 52 321 IPR045321 -
Spst4g03308 324 MobiDBLite consensus disorder prediction 1 20 - -
Spst4g03308 324 MobiDBLite consensus disorder prediction 1 17 - -
Spst4g03308 324 SUPERFAMILY (Trans)glycosidases 49 318 IPR017853 -
Spst4g03308 324 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 170 178 IPR001579 GO:0004553|GO:0005975
Spst4g03308 324 Gene3D Glycosidases 52 323 - -
Spst4g03308 324 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 52 324 IPR001223 GO:0005975
Spst4g03308 324 FunFam Acidic endochitinase SE2 52 323 - -
Spst4g03308 324 Pfam Glycosyl hydrolases family 18 54 310 IPR001223 GO:0005975
Spst4g03308 324 PANTHER ENDOCHITINASE 37 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03308 Spst-Chr4 72941639 72943084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03308 29 323 Glycoside Hydrolase AT5G24090 55.518 1.29e-119 345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03308 4 72941639 72943084 Spst10g00891 10 9666066 9667019 PCT