Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00757 ATGGGTTCCGAACCTTCCACTGTTGTTGTTCCTAGGAATTTCAGATTATTGGAAGAACTTGAGAGAGGTGAGAAGGGAATTGGAGATGGAACGGTTAGCTATGGAATGGATGATGCTGATGATATATACATGCAGTCATGGACTGGGACTATTATTGGGCCCCCTGGTACTGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGATTATCCTGACAATCCACCATCTGTTAGATTTCAGACTAGGATTAACATGACTTGTGTCAACCAAGAAACTGGAGCGGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGCAACGAGAGTGTACAATGGAAGACATTTTGATGCAATTGAAGAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTGGTGCTGAGATGTTGTATCGTGTAA 480 0.4313 MGSEPSTVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRINMTCVNQETGAVEPHLFPMLANWQRECTMEDILMQLKKEMISPQNRKLAQPPEGNEDGRIDQKGLVLRCCIV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00757 159 Gene3D Ubiquitin Conjugating Enzyme 2 144 IPR016135 -
Spst3g00757 159 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 11 159 IPR000608 -
Spst3g00757 159 Pfam Ubiquitin-conjugating enzyme 41 135 IPR000608 -
Spst3g00757 159 SMART ubc_7 14 158 - -
Spst3g00757 159 FunFam Ubiquitin-conjugating enzyme E2 variant 1C 2 144 - -
Spst3g00757 159 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 44 133 - -
Spst3g00757 159 SUPERFAMILY UBC-like 8 142 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00757 Spst-Chr3 11111208 11114733 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00757 3 11111208 11114733 Spst3g00757 3 11111208 11114733 ECH