Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00750 ATGTGTTCGCTGACCCACTTGCGTCCGCTAACCTGCGCCGCGTCTGCATCGGCGTCACGATTAGTGCCCCACCCACCGGACCTCATAAAGTGGGTAACCAGAGAGGGTGGGTTCGTGCACCGCGCGGTGAAGATAGCGCAACTCGATTCCTCGAATGGACTGGGCCTAGTGGCCAAGGAACAAATTCCACCCGGCACTGACCTAATTGTCCTCCCACACCACATTCCCCTGCGCTTTACCACTCTCCAACACGACCCTCTGCTGCATCGCTTGGCAAGCCAAGTCCCTGAGGAACTATGGGCCATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGGGCAAAAGTTGGGTCCTTCTGGTGGCCCTATATAAGTAATCTCCCAGAGACATATACCGTGCCTATTTTCTTTCCTGGGGAGGACATAAAGAACTTGCACTATGCTCCTCTTCTTCACCAGGTAAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAATCAAGCGTGCCTTAGTAAGTGTTAAGCCAGATAGCCATCCTTTTGGTGGTCACCAAGTAGATGCGTCTTCCCTTGGATGGGCAATGTCAGCAGTCTCGTCTAGAGCATTCCGGTTGTATGGTGAAAAGGAACCAAATGGAGACCGCATTAACATACCCATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAAGAAGATACCAGTACCATGAAGATGCAAGTGAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTCTGTTACTTTGCTATGGCTGTTTGAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATGCATTCAAACCCTTTTGATTGTATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGTACAGCAGCTGGAGTTTCTTCACCAAATTTCTCAACACCTGCTCCGTGGCAGGAACTGATTTTATCCCAGTTGAATCTATCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAACAGTTGAGGGCCGCTTGGTGGCTGCATTGCGAGTACTCCTTTCAAGTAATATGGAAACTGTGCAGAAGTATGACCTGAGTACACTACAGTCTTTGGATGCTGACGCTCCTCTTGGTGTTGAAAATGACATAGCTGTATTTCGCACCCTAATTGCTTTGTGCGTCATTGCACTGGAACACTTTCCCACCAAAATAATGGATGATGAATCACTGTTGAAGCAGGGTGCTTCAGGTTCAACCGAGTTAGCCATTCGGTACAGAATCCAAAAGCAATGCGTAATTATAAACGTAATGAAAAATCTCTCAAGGAGGGTAAAGCTTCTATCATCAAAGGAAACAGCAACCGCCGATGGTTAA 1398 0.4642 MCSLTHLRPLTCAASASASRLVPHPPDLIKWVTREGGFVHRAVKIAQLDSSNGLGLVAKEQIPPGTDLIVLPHHIPLRFTTLQHDPLLHRLASQVPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEQEIKRALVSVKPDSHPFGGHQVDASSLGWAMSAVSSRAFRLYGEKEPNGDRINIPMMLPLIDMCNHSFNPNARIVQEEDTSTMKMQVKVVAETAIKEDDPLLLCYGCLNNDFFLLDYGFVMHSNPFDCIELKYDGALLDAASTAAGVSSPNFSTPAPWQELILSQLNLSGETPDLKVSLGGQETVEGRLVAALRVLLSSNMETVQKYDLSTLQSLDADAPLGVENDIAVFRTLIALCVIALEHFPTKIMDDESLLKQGASGSTELAIRYRIQKQCVIINVMKNLSRRVKLLSSKETATADG 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00750 465 SMART set_7 41 276 IPR001214 GO:0005515
Spst3g00750 465 FunFam SET domain containing protein 306 459 - -
Spst3g00750 465 Pfam Rubisco LSMT substrate-binding 320 438 IPR015353 -
Spst3g00750 465 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 280 459 IPR036464 -
Spst3g00750 465 Pfam SET domain 53 270 IPR001214 GO:0005515
Spst3g00750 465 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 27 430 - -
Spst3g00750 465 CDD SET_LSMT 42 284 - -
Spst3g00750 465 Gene3D set domain protein methyltransferase, domain 1 8 283 - -
Spst3g00750 465 ProSiteProfiles SET domain profile. 43 270 IPR001214 GO:0005515
Spst3g00750 465 SUPERFAMILY SET domain 23 288 IPR046341 -
Spst3g00750 465 Gene3D - 321 462 IPR036464 -
Spst3g00750 465 FunFam Histone-lysine N-methyltransferase setd3 1 283 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst3g00750 SET 7e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00750 3 11058188 11060848 Spst3g00750 3 11058188 11060848 ECH