Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00747 ATGATGGAGTCAAAGGTTGTGCGGTTCTTAGCGTACCAATCAATATTTTCGAGCGTTGGATCTGGGGACTTCGATGGGGTGAAGAAACTGGTGGAGAAAGTGAAGAAGGAAGAAGGGTCATCGCTCTTTGATGTGATGTCTCTTCAGAACGATGCTGGAGAGACTGCACTTTACATAGCTGCAGAGAATAATCTGCAAGAGATTTTCAGCTACTTGCTCAACATGTGTGACTTTGAAGCCGTCAAGATTCGCTCCAAGTCTGATATGAACGCCTTTCACGTTGCTGCCAAGCGTGGTAATCTAGATATTGTGAGGGAACTTTTGAATACTTGGCCTGAGGTCTGCAAGTTATGCGACTCCTCAAACACCAGTCCTCTATATTCTGCAGCAGTTCAAGACCACTTGGATGTGGTGAATGCTATCTTGGATATTGATGTCGGTTCCATGTTAATAGTTAGAAAAAACGGCAAAACTTCATTGCACAATGCTGCCAGGTATGGCGTGGTTCGTATTGTAAAAGCACTTATTGCTCGGGATCCAGGAATAGTATGCATAAAAGATAAAAAAGGTCAAACTGCACTGCATATGGCTGTCAAAGGACAGTGTACATTAGTGGTAGAGGAGATATTACTAGCTGATCCTTCTATATTGAATGAGCGAGATAAGAAGGGTAATACAGTTCTTCACATGGCTACAAGGAAATGCCGTTCACAGATAGTGAGCCTTTTGCTAAGCTATTCTGCCATGGATGTTAATGCCATCAACAAGCAGCAGGAAACAGCCTTGGATTTGGCAGATAAACTGCCATATGGAGATTCAGCTTTGGAAATCCAGGAAGCCCTTGCAGAATATGGAGCTAAGCATGCCAGGCATGTTGGCAAAGTAGATGAAGCAATGGAACTTAAGAGGACCGTGAGTGATATAAAGCATGAGGTGCAGTCACAACTTATACAAAATGAAACAACTCGCCGACGGGTTTCTGGAATTGCCAAGGAACTGAAGAAACTTCATAGAGACGCAGTTCAAACCACCATTAATTCTGTTACTGTGGTTGCTGTCCTTTTTGCCTCAATAGCCTTCTTGGCCATCTTCAATTTGCCCGGTCAATATGAAAAGATACCCGGAGAAGAGATTGGGGAAGCTAATATAGCCAATCATCTTAGTTTCCAAGTTTTCTGCTTTCTGAATTCTACATCCCTTTTCATTTCTCTTGCAGTTGTTGTAGTTCAAATCACCTTGGTAGCCTGGGACACAAGGGCTCAAAAACAGATTGTGTCAGTGGTTAACAAGTTGATGTGGGCTGCATGTGCTTGCACTTGTGGTGCTTTTCTAGCAATAGCTTTTGAGGTCGTTGGAGGGAAAACATGGATGGCTATCACCATAACCCTTTTGGGTGTACCTATTCTAGTTGGGACTCTAATAAGCATGTGCTACTTTGTTTTCCGACAACATTTCGGTATTTTCCGCAGTGATTCCCAGAGACGCATCAAGCGAGCAAGTGGAAGCAAATCTTTCTCATGGTCGTATTCTGCAAATATATCAGATTTGGATGAATACGATTCTGACATTGAGAAGATCTATGCCCTGTGA 1590 0.4296 MMESKVVRFLAYQSIFSSVGSGDFDGVKKLVEKVKKEEGSSLFDVMSLQNDAGETALYIAAENNLQEIFSYLLNMCDFEAVKIRSKSDMNAFHVAAKRGNLDIVRELLNTWPEVCKLCDSSNTSPLYSAAVQDHLDVVNAILDIDVGSMLIVRKNGKTSLHNAARYGVVRIVKALIARDPGIVCIKDKKGQTALHMAVKGQCTLVVEEILLADPSILNERDKKGNTVLHMATRKCRSQIVSLLLSYSAMDVNAINKQQETALDLADKLPYGDSALEIQEALAEYGAKHARHVGKVDEAMELKRTVSDIKHEVQSQLIQNETTRRRVSGIAKELKKLHRDAVQTTINSVTVVAVLFASIAFLAIFNLPGQYEKIPGEEIGEANIANHLSFQVFCFLNSTSLFISLAVVVVQITLVAWDTRAQKQIVSVVNKLMWAACACTCGAFLAIAFEVVGGKTWMAITITLLGVPILVGTLISMCYFVFRQHFGIFRSDSQRRIKRASGSKSFSWSYSANISDLDEYDSDIEKIYAL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00747 529 SUPERFAMILY Ankyrin repeat 15 286 IPR036770 -
Spst3g00747 529 Pfam Domain of unknown function 341 447 IPR026961 -
Spst3g00747 529 Pfam Ankyrin repeats (3 copies) 187 253 IPR002110 GO:0005515
Spst3g00747 529 Pfam Ankyrin repeats (3 copies) 87 145 IPR002110 GO:0005515
Spst3g00747 529 ProSiteProfiles Ankyrin repeat profile. 155 176 IPR002110 GO:0005515
Spst3g00747 529 SMART ANK_2a 87 116 IPR002110 GO:0005515
Spst3g00747 529 SMART ANK_2a 121 151 IPR002110 GO:0005515
Spst3g00747 529 SMART ANK_2a 223 253 IPR002110 GO:0005515
Spst3g00747 529 SMART ANK_2a 155 184 IPR002110 GO:0005515
Spst3g00747 529 SMART ANK_2a 189 218 IPR002110 GO:0005515
Spst3g00747 529 SMART ANK_2a 52 80 IPR002110 GO:0005515
Spst3g00747 529 Gene3D - 11 307 IPR036770 -
Spst3g00747 529 ProSiteProfiles Ankyrin repeat region circular profile. 155 176 - -
Spst3g00747 529 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 42 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00747 Spst-Chr3 11042744 11045820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00747 2 529 Miscellaneous Gene Families AT2G01680 68.401 0.0 722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00747 3 11042744 11045820 Spst3g00747 3 11042744 11045820 ECH