Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00744 ATGTCTTCCCCAAACGCCGCCCCTCAGACTCACTCGCCGCTCCTTCTCCCGCGTCCCGATGGCGCCTCATCTCGTCTTCCCGTCCTTGCGCTCCTCCTCGGCCGCCGCGGCCACTCCACCGTGGTCCGAGAGACGGCGGCGCGTGAGCTCGAGGAGCGCCGCGCCGACTGGACCTACTCCAAGCCTGTGGTGGCGCTCGACATGACGTGGAACATGGCCTTCGTGGTGGTTTCGGCGGTGATGGTCGCCTGCTCCGTCAAGGAGAAGCCCAACACGCCAATCCGGTGGTGGATCTGCGGCTACGCGCTGCAGTGCCTCGTCCACGTGGCGCTCGTGTGGCTCGAGTACAGGAGGAGGAGCGACGCTCCCAGCGACGAAGAATCTGGTGGCCACCTCGATTACGAAGACGTCAACGAGAGCGACGAGGACGATGTTGGAACCTCCGGGAGTTCCCCTTCCACTGCATTCACTAAACGATGTGCATCATTGAATACCATGATTTCGTTACTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGACATTCTTCTGCAAGATGCTCCGCATTTATACTGGTTGGCTGTTGTCTTTCTTGCATTTGATGTCTTCTTTGCTATCTTTTGTGTTGTGTTGGCGTGCTTGATTGGAATCGCCCTCTGTTGTTGTTTACCCTGTATTATTGCTATTCTCTATGCTGTTGCAGGACAGGAGGGTGCATCAGAATCGGATCTCAGTGCTCTTCAGAAATACAGATTTCAAATGTTAAGCAATGGGGAAACACCTAGTGAGGGAGGTGGATCAATGATTCCTATGGAGGAGACCAACAATGGTTACTCAGTGAATGAACGAATACTTTCAACTGAGGATGCAGAATGCTGTATATGCATCTCTTCTTATGAGGATGGAGCGGAACTTAATGTTCTTCCATGTAACCATCATTTCCATTCTACATGCATAGTGAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTTCAATATTTTGAAGGGAAATGAACAGATTATATCAAGACATGAAAGAATAGAACTTCTCCCAATTTGCTCGGTTTAG 1086 0.512 MSSPNAAPQTHSPLLLPRPDGASSRLPVLALLLGRRGHSTVVRETAARELEERRADWTYSKPVVALDMTWNMAFVVVSAVMVACSVKEKPNTPIRWWICGYALQCLVHVALVWLEYRRRSDAPSDEESGGHLDYEDVNESDEDDVGTSGSSPSTAFTKRCASLNTMISLLWWMVGFYWVVSGGDILLQDAPHLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASESDLSALQKYRFQMLSNGETPSEGGGSMIPMEETNNGYSVNERILSTEDAECCICISSYEDGAELNVLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQIISRHERIELLPICSV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00744 361 Pfam Ring finger domain 294 336 IPR001841 -
Spst3g00744 361 MobiDBLite consensus disorder prediction 121 154 - -
Spst3g00744 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 344 IPR013083 -
Spst3g00744 361 FunFam E3 ubiquitin protein ligase RIE1 275 343 - -
Spst3g00744 361 SMART ring_2 295 335 IPR001841 -
Spst3g00744 361 SUPERFAMILY RING/U-box 285 341 - -
Spst3g00744 361 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Spst3g00744 361 MobiDBLite consensus disorder prediction 121 135 - -
Spst3g00744 361 PANTHER TARGET OF ERK KINASE MPK-1 34 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00744 Spst-Chr3 11015670 11018865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00744 1 345 C3H Transcription Factor Family AT1G68070 66.006 1.71e-163 459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00744 3 11015670 11018865 Spst3g00744 3 11015670 11018865 ECH