Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00729 ATGGTGAAACCCAACGAAAATGGTTTTGGTTCCGGTTCGGTGCCCCCGTTTTTGAAAAAATGTTACGATATGGTGGAAGACCGGAACACGGACTCCGTTATCCGTTGGAGCGACGGCGGCGATAGTTTCGTCATCTCCGACACCACTCAATTCTCCGTCACGCTCCTTCCCACCTATTTCAAACACAACAATTTCTCCAGTTTCATTAGACAGCTCAATATCTATGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAAAACTTTGTTAGGGATCAAAAGCAATTGTTGAAGAATATACACAGAAGGAAACATCCACAAATTGCTGCAGATCAGCAAAAAACATTATCTCAGAATGACAATTGTGATGAACCATCGCCAGTGACACCAACTCATGGCCTTTGGAAAGAAGTTGAGAATCTCAAATCTGATAAAAATTCGCTGACCCAGGAGTTAGTCAAACTCAGGCAACACCAGGAATCTGCTGAGAATAAGTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTATCATTCTTAGTCATGGTCGTCCAAAGTCCTGGATTCCTGGTTCAACTCCTTCATCCTAAGGAAAATAATTGGCGTTTGTCTGAATCATGGAATGTATTAGATCAAGATAAACAAGACGACAAGCCAATTGCTTCTGATGGGATGATAATAAAGTATAAACCACCAGTAGGTGAAAAACTAAAGCCTGTAGTTCCTCTGTCTCCTTCTTTCGAAAAGCAACCAGAACCTGAGCTCTCTGCAGATGGGTTAAAAGACTTGTGCATAAGTTCTGAATTCTTGAAAGTGCTTCTGGATGAAAAATTATGTCCATTAGAAAATCATTCTCCATTTCTCCTACCAGATTTACCTGATGACGGTTCATGGGAGCAACTTTTTCTAGGCAGTTCTTTCCTGGGTAACATTGAAGATTCCAATAAAGAAAGTGAGGGGAGTGCTGCTGATAGCGGAATGGATATGGAACCAACAATATCTGAGACTCCAAATGAAAATTCTCGAACTTTTGAATCGATGATTGTAGAGATGGAGAAAAGTCGAGAATGA 1101 0.4133 MVKPNENGFGSGSVPPFLKKCYDMVEDRNTDSVIRWSDGGDSFVISDTTQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRDQKQLLKNIHRRKHPQIAADQQKTLSQNDNCDEPSPVTPTHGLWKEVENLKSDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFLVQLLHPKENNWRLSESWNVLDQDKQDDKPIASDGMIIKYKPPVGEKLKPVVPLSPSFEKQPEPELSADGLKDLCISSEFLKVLLDEKLCPLENHSPFLLPDLPDDGSWEQLFLGSSFLGNIEDSNKESEGSAADSGMDMEPTISETPNENSRTFESMIVEMEKSRE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00729 366 FunFam Heat stress transcription factor B-4 10 107 - -
Spst3g00729 366 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g00729 366 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g00729 366 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g00729 366 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g00729 366 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g00729 366 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g00729 366 MobiDBLite consensus disorder prediction 113 129 - -
Spst3g00729 366 MobiDBLite consensus disorder prediction 341 355 - -
Spst3g00729 366 MobiDBLite consensus disorder prediction 322 366 - -
Spst3g00729 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 228 IPR027725 -
Spst3g00729 366 Gene3D - 10 107 IPR036388 -
Spst3g00729 366 SUPERFAMILY "Winged helix" DNA-binding domain 13 106 IPR036390 -
Spst3g00729 366 MobiDBLite consensus disorder prediction 113 133 - -
Spst3g00729 366 Coils Coil 141 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00729 Spst-Chr3 10932731 10934831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00729 14 315 HSF AT1G67970 49.013 1.45e-89 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst3g00729 HSF_DNA-bind 1.6e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00729 3 10932731 10934831 Spst3g00729 3 10932731 10934831 ECH