Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00116 ATGGACAATGGTTGCTTCTCTTCTCCACGCCACGATGCTTTTCCAGCTGGTCTGCGAGTTCTCGTTGTTGATGATGATCCGACATGGTTGAGGATCCTTGAAAAGATGCTGAAGAAGTGCTTGTATGAAGTGACTACATGTTGTTTAGCAACAGAGGCTCTGAAAAAACTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTGAACATGCCTGATATGGATGGTTTCAAACTTCTTGAGCAAGTTGGACTTGAGATGGATCTTCCTGTTATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTCCAACATGGTGCATGTGATTATCTTCTCAAGCCTATAAGAATGAAAGAACTGAGAAACATATGGCAGCACGTCTTTAGAAAAAGGATGCATGAGGCAAGAGATTATGAAAGTCATGAGGGTTTTGAGACCCTTCACTTGATAATGAATGGATCAGATCAGTCTGATGATGGTAACCTCTTTGCTGTAGAAGAAATTACCTCAATGAAGAAAAGAAAAGATGCTGATAACAAGCACGATGACAAAGAATTGGGAGATCATTCTCCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAATTTGTCAAAGCAGTGAATCAAATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATCTGATGAGTGTTCCCTGGTTGACAAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGAACAGAAATCTTCCTCAAGTGGAATAAAGCATTCGGATTCACCTTCAAAAGATACAGGAAGTTTTAGTTTTCTAAACACTGCAAACAACAAGCAACAAAATGATGTCGCCATTGACAGCTTCAGTTATTCAGATGGAACTTCACTACTTCAGATGGATGGTCCAAGTCATGAAAGTGATCTCAAGGGAATCGTGTCAGAGCCTACAACCGAAAAAAGAAGAACATCGACTAGTGACATTTCTGATCCAAAGATACCAAAAAGTTCACAGATGACCCTCAATGAACCTTTTGCATCTTTAGAGTCATCAGAAGCAAGCCATGCAGTATTTGATTGCACGATACCAAGACAGTACTCTTGGAGTGAGTTTCCGAAAGGACCACTCAAAGAAGAACAGAAGACAATCGTTCAATTAGAGGATAGCTTCAGCCAGTTGCCATTACATGGTACACAGCATCACATTCAGGTTGATCAATCACAATCAATTGCTTCGATTAATTCCAATCCTTCTATAACAGAAAAAGAGGTTGCTCCCAGCATAGACACCAAGCCTTTGTATGCTGGTTACAAGAGTGATTACATGAGTCCTGTGAGTTCAATAGGATCTGCAGTTGACACCTTTCCTAAACAGTCCAAAAGCGTCATCGTGAATGATCAATCTTCACAGCCCATTTTCACCTCAAATGTGAGCTTGAAAACTCAGGGATTTAACGTAGATTGCATTTCTGATCTGGACTTTTACCAAATGAACCTATTAATGGGTGGTGAAGCAGCAGCTTCTTCACCGTTGGAGGAGGACCTGAATCACTTTTTGCTACAAAGTGAATGGTACAACATGAATTTTGGGCTGCAGCATATAGATATGTCAGAATATTATGATCCAAGGTTTATTGCTGAAGCCCCTAGTTACTTTTATGATTCAGCAGATTATTCATCGGTAGATCAAAGTCTATTCATAGCATGA 1749 0.4002 MDNGCFSSPRHDAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDYESHEGFETLHLIMNGSDQSDDGNLFAVEEITSMKKRKDADNKHDDKELGDHSPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMSVPWLTRENVASHLQKYRLYLSRLQKENEQKSSSSGIKHSDSPSKDTGSFSFLNTANNKQQNDVAIDSFSYSDGTSLLQMDGPSHESDLKGIVSEPTTEKRRTSTSDISDPKIPKSSQMTLNEPFASLESSEASHAVFDCTIPRQYSWSEFPKGPLKEEQKTIVQLEDSFSQLPLHGTQHHIQVDQSQSIASINSNPSITEKEVAPSIDTKPLYAGYKSDYMSPVSSIGSAVDTFPKQSKSVIVNDQSSQPIFTSNVSLKTQGFNVDCISDLDFYQMNLLMGGEAAASSPLEEDLNHFLLQSEWYNMNFGLQHIDMSEYYDPRFIAEAPSYFYDSADYSSVDQSLFIA 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00116 582 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Spst3g00116 582 Gene3D - 18 198 - -
Spst3g00116 582 MobiDBLite consensus disorder prediction 262 288 - -
Spst3g00116 582 SUPERFAMILY CheY-like 17 149 IPR011006 -
Spst3g00116 582 CDD REC_typeB_ARR-like 20 134 - -
Spst3g00116 582 FunFam Two-component response regulator 196 259 - -
Spst3g00116 582 SMART REC_2 18 130 IPR001789 GO:0000160
Spst3g00116 582 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Spst3g00116 582 MobiDBLite consensus disorder prediction 310 352 - -
Spst3g00116 582 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 283 IPR045279 GO:0009736
Spst3g00116 582 Gene3D - 199 259 - -
Spst3g00116 582 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Spst3g00116 582 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Spst3g00116 582 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Spst3g00116 582 PIRSF RR_ARR_type-B 2 562 IPR017053 GO:0003677|GO:0003700|GO:0009736
Spst3g00116 582 MobiDBLite consensus disorder prediction 326 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00116 Spst-Chr3 2079447 2083480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00116 12 266 Response Regulator Gene Family AT2G25180 53.558 9.85e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Spst3g00116 Response_reg 1.3e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00116 3 2079447 2083480 Spst3g00116 3 2079447 2083480 ECH
Spst1g01927 1 27530039 27533650 Spst3g00116 3 2079447 2083480 PCT