Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02315 ATGGAGCACTCACACTTCTTCGGTGAAGACGAGGGCATAGCCCATATCGTAGACTCGCTTGCTTTTCCAACCATGGATTCTTCTTCCCGGGACCCTTCGCTCGAAGACAACGACTTCTCAGAAACTGCCAAGTTCATTAGCCAGATCCTCATGGAAGAGAACGTCGAAAACAAGCCATTCTACGACTCACTCACCTTGCAAGTCACCGAGAAATCCTTCTACGACGCTCTCGCCGGTAACCTACCTCCTTCCCCCAATCAACACCCCCTTGCTTTCAGTCCCGAAGCTGATACAACCACCACCAACAGCAGCAGCAGCAGCATCAACAACAACAATTTTTCAGATGAAAATTCTAGTGAGTTGAAGCTTCCCTCTCCAGATTCTGTTTCTGTTTTTACGTTTAACTCCCCCGCCCTTTCCCAACCATCTCCTTCATTTGCCGCCAATCATGGACTCCAAGATTTGGATTCTTCTATTGCCAAGCTCTTGGCACAGAATATTTTCAACGATGTTGATTCCGTTTCCCAGTTTAGGCGAGGCATGGAGGAAGCTAGCAAGTTTCTTCCTCCTGGGCCTAACCTTGTGACTGGTCTAGATTCAATTGGAGAACAAGCGGAAAATAAGTCTGGAGAGACTTCGTCTGGGTTGAAGAGTGGGAAGAATCACAAGCGGGAAGAGAGATACGCTATTGAAGAAGAAGAAAAAGAAGAAGAAAAAGGGAGAAGTAACAAGCAATCAGCCCTATCCCATGTTGATGAGAGTGACTTGTCAGATGCTTTTGATCGGGTGTTGCTTCATGAGGGAAACATGTGTAGCGAACACAGTTATTTGCCAAGTGGAGCAGTGAAGGTTGAGGAATCAGATGGAGGGAGGGGTCGTTCTAGGAAACAAGGGAGGAACAAGGAAACAGTTGATTTGAGGAATCTTCTGTTGATGTGCTCACAATCTGTGTATGCCAACGACAACAGGACTGCCAATGAATTGCTAAAGCAGATTAGGCAACACTCTTCTCCCTTTGGGGATGCATCACAGAGGTTGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCTTGGTTGGGGATGGTACAGTTGCACAAGGAATGTATTCTTTTCTGATCTCCAAGAGGAGCTCTGCTGCTGAGTTTCTCAAGGCATACCAGGTTTTCCTTTCTGCTGCCCCTTTCAAGAAGTTTACATATTTCTTTGCAAATAAAATGATTATGATAGCAGCTGCTAAGGCAGAAACCATCCATATTATTGATTTTGGCATCCTATATGGTTTCCATTGGCCAATTCTTATTAAGCTTTTATCAAATAGAGAGGGGGGTCCTCCCAAACTGAGGATCACAGGGATAGAGTTTCCCCAACCTGGCTTTCGCCCCACAGAAAGAATTGAGGAGACTGGTCGCCGTCTGGCTAACTATTGTAAGCGATACAATGTTCCCTTTGAGTACAATGCGATAGCATCAAGGAATTGGGAAACAATTCAGGTTGAAGCCCTTAAAATTGAAAGCACGGAGCTAGTTGCTGTCAATTGTCACATGAGGTTTGAGAATTTACTGGATGAGTCTATTGAAGTGAACAGTCCTAGAAATGCAGTCTTGCATTTGATCAGGAAGATAAATCCAGATATTTTTACCCATTCCATCACTAATGGATCATATAATGCCCCCTTCTTTGCCACAAGGTTTAGGGAGGCTTTGTTTCATTATTCTGCTATTTATGATATGTGTGACACTGTCATACCTCGTGAAAACGAGTGGAGGTTGATGATTGAGAGAGAGCTTTTGGGCCGGGAGGCTACGAATGTTATAGCATGCGAAGGTTCTGAGAGACTTGAGAGGCCCGAGACATACAAACAGTGGCAGGTTAGGAATACAAGGGCTGGTTTCAAGCAGCTCCCATTGAATAAGGAATTAATGGCCAAATTTAGGACCAAGATAAAGGAATGGTACCACAGAGATTTTGTCTTTGATGAAGATAACAATTGGATGCTTCAAGGTTGGAAGGGCCGCATTTTGTATGCTTCCACTTGTTGGGTGCCGGCATAA 2052 0.4483 MEHSHFFGEDEGIAHIVDSLAFPTMDSSSRDPSLEDNDFSETAKFISQILMEENVENKPFYDSLTLQVTEKSFYDALAGNLPPSPNQHPLAFSPEADTTTTNSSSSSINNNNFSDENSSELKLPSPDSVSVFTFNSPALSQPSPSFAANHGLQDLDSSIAKLLAQNIFNDVDSVSQFRRGMEEASKFLPPGPNLVTGLDSIGEQAENKSGETSSGLKSGKNHKREERYAIEEEEKEEEKGRSNKQSALSHVDESDLSDAFDRVLLHEGNMCSEHSYLPSGAVKVEESDGGRGRSRKQGRNKETVDLRNLLLMCSQSVYANDNRTANELLKQIRQHSSPFGDASQRLAHYFANGLEARLVGDGTVAQGMYSFLISKRSSAAEFLKAYQVFLSAAPFKKFTYFFANKMIMIAAAKAETIHIIDFGILYGFHWPILIKLLSNREGGPPKLRITGIEFPQPGFRPTERIEETGRRLANYCKRYNVPFEYNAIASRNWETIQVEALKIESTELVAVNCHMRFENLLDESIEVNSPRNAVLHLIRKINPDIFTHSITNGSYNAPFFATRFREALFHYSAIYDMCDTVIPRENEWRLMIERELLGREATNVIACEGSERLERPETYKQWQVRNTRAGFKQLPLNKELMAKFRTKIKEWYHRDFVFDEDNNWMLQGWKGRILYASTCWVPA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02315 683 Pfam GRAS domain family 306 680 IPR005202 -
Spst2g02315 683 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 233 676 IPR005202 -
Spst2g02315 683 MobiDBLite consensus disorder prediction 217 248 - -
Spst2g02315 683 ProSiteProfiles GRAS family profile. 297 681 IPR005202 -
Spst2g02315 683 MobiDBLite consensus disorder prediction 205 253 - -
Spst2g02315 683 MobiDBLite consensus disorder prediction 91 124 - -
Spst2g02315 683 MobiDBLite consensus disorder prediction 78 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02315 Spst-Chr2 22496722 22498773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02315 44 683 GRAS Transcription Factor Family AT1G07530 48.489 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst2g02315 GRAS 3.4e-113 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00413 5 3296365 3298536 Spst2g02315 2 22496722 22498773 PCT
Spst2g02315 2 22496722 22498773 Spst5g00414 5 3313822 3315870 PCT