Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02075 ATGGCTCCGTCGCGTTCGGGCGGTGACGCATGCAAGGGAGGCGCGGTCGAGTTCCCGGCCGGGCTCCGGGTTCTCGTCGTTGATGACGACGCCACCACGCTGAGGATTATCGAGCAAATGTCAATTCGATGCCGTTACCGCGTTACCACATGCACTGAGGCTACAGTGGCTTTGAATCTTCTGCGGGAAAGGAAAGGTTGTTTTGATGTGGTGCTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGCTGGAAATGGACCTTCCTGTAATTATGATGTCTGGTGATAGTACAACAAGTGCTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTGATTAAGCCTGTACGAGAGGAAGAACTGAGAAATATATGGCAACATGTTGTTAGGAAAATCTGGAACGAGAATAAAGAACATGATAACTCTGGCAGTATGGAAGACAGTGACTGGAATAAACGGGGGAATGATGATACTGAATATACTTCTGTTGCTGATGCAGCAGAATTAGTTAAAGCACCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAGCTACATCTAAGAAGCCTCGAGTTGTGTGGTCAGTAGAATTGCATCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCAAGTCATTTGCAGAAATTTAGACTTTATTTGAAGCGATTAAGTGGAGTGGCACAGCAACATAATGGGATGCTAAATGCAGTTCCTGGAATTATAGAATCCAAGCTGGGTGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCCCCGGAAACACTCGCAGCCCTTCATGCTGAGCTCTTAGGTCGTCCTGCAGCTAATATAATGTCTACAGTGGACCAGGCTACCTTGCTGCAAGCATCCATACAGGGGCAAAAAATTTCCCATGCTGAACATGCTGTGGCGTATGGTCAGCCTCTTGTAAAGTGTCTTTCCAACATTGGCAAGAATTTTCCTCCATCTATCATAACTGCAAATGATGTGTCATCAGCATATGGTGCATGGATGTCATCTAATATTACAGTGAGGCCCAATAATAGTGTTGAAAGAGTGGGTACCCAGAATAACAACATGCTGATGGATATGTTAGAGCACCGACAAAGGCAGCAGCCCCAGCAACAGCCTCTGATACATGATCAAAGTTGTTCAATCAATGTTCAACCATCTTGCTTGGTGGTTCCGTCTCAATCCTCTGACACTTTACATGCAGTAAATAGTTGTGCTTCTATCAATCAGGATTGCAGTTTTGGCAGGAATGCCATTATTGATTACAGTTTATTGTCACAGAAATCAAATAATTCAATTACTGCATCTCAATTTCCTGGTGGGGACACAAAAGCTCAAGGTGTTCTCTATGGGTATACTATACCCTCTACTTGTTCTATGAGCTCCATCAATGGCAGTATTCAGCAGCTTCAAAACTCAACTTTGACATTTGGTTCTGCAAGAGCGTTGCCTAGCCCTTTGCCCATGTCTGATAGACAAGATCCCTATGGTTTCAAATCGGGTGATTCATTTGATCAAGTATGTCTTAGGAATCTTGGGTTTGTTGGCAAAGATACCTGCATTCCAAATAGGTTTGCGCAAAAGGAAATTGAATCATCTGTAAGTGATTTTAGTCAAATGAAAGTCAATGTAGATAGCAGTGGCAACACACTGCAGGAGGAGCCAAATTTTATAAATATGCAAAAAGGGAGTCGCCCAATCATAGAAAGATATCAATCTTGTGATCATTCAAGCGTGTTCACTGAATAG 1896 0.4309 MAPSRSGGDACKGGAVEFPAGLRVLVVDDDATTLRIIEQMSIRCRYRVTTCTEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKIWNENKEHDNSGSMEDSDWNKRGNDDTEYTSVADAAELVKAPKKRSSLKEEDIELESDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQHNGMLNAVPGIIESKLGATGRFDIQALAAAGHVPPETLAALHAELLGRPAANIMSTVDQATLLQASIQGQKISHAEHAVAYGQPLVKCLSNIGKNFPPSIITANDVSSAYGAWMSSNITVRPNNSVERVGTQNNNMLMDMLEHRQRQQPQQQPLIHDQSCSINVQPSCLVVPSQSSDTLHAVNSCASINQDCSFGRNAIIDYSLLSQKSNNSITASQFPGGDTKAQGVLYGYTIPSTCSMSSINGSIQQLQNSTLTFGSARALPSPLPMSDRQDPYGFKSGDSFDQVCLRNLGFVGKDTCIPNRFAQKEIESSVSDFSQMKVNVDSSGNTLQEEPNFINMQKGSRPIIERYQSCDHSSVFTE 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02075 631 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Spst2g02075 631 CDD REC_typeB_ARR-like 24 138 - -
Spst2g02075 631 Gene3D - 22 156 - -
Spst2g02075 631 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 401 IPR045279 GO:0009736
Spst2g02075 631 Gene3D - 201 264 - -
Spst2g02075 631 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Spst2g02075 631 SUPERFAMILY CheY-like 21 145 IPR011006 -
Spst2g02075 631 SMART REC_2 22 134 IPR001789 GO:0000160
Spst2g02075 631 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
Spst2g02075 631 Pfam Response regulator receiver domain 24 133 IPR001789 GO:0000160
Spst2g02075 631 PIRSF RR_ARR_type-B 4 628 IPR017053 GO:0003677|GO:0003700|GO:0009736
Spst2g02075 631 FunFam Two-component response regulator 201 264 - -
Spst2g02075 631 FunFam Two-component response regulator 22 159 - -
Spst2g02075 631 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 261 IPR017930 -
Spst2g02075 631 MobiDBLite consensus disorder prediction 181 201 - -
Spst2g02075 631 MobiDBLite consensus disorder prediction 147 166 - -
Spst2g02075 631 Pfam Myb-like DNA-binding domain 207 255 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02075 Spst-Chr2 19940553 19945168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02075 56 319 Response Regulator Gene Family AT3G16857 53.659 2.24e-90 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Spst2g02075 Response_reg 1.6e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02075 2 19940553 19945168 Spst2g02075 2 19940553 19945168 ECH