Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02289 ATGAAACAACACTTTGATCTTGAAGTGGTGGCCTCAGCAGAATATGAATCTGAAATTAGCAGCCAGGTTGCTTCCAACATATCTATTCAAGAAACCTATGCAGGTCCTTGCAGCAACAACCTTACCAACAACTCTTCCAATGTCACAAAACCAATAGAACCTCATCTCCAATCAGATGCTATCTCCCTCGACTTAACTCTCAACTTCAACAACAATGACTTGGTGGTTGGAGATTCGAGAGGACTCTCATTCTCAAGCACTACAAGTGAGAGCAGAAACGATCCTCCCTCTCAGAGTACTCACTCTCAAACCATGCCACGAGTCTTCTCTTGCAATTATTGTAAGCGCAAGTTTTTCAGCTCTCAGGCTCTTGGTGGCCACCAGAATGCACACAAGAGAGAAAGAACATTAGCAAAGAGAGCCTTGCGGATGGGTTTTTTCTCCGAGAGGTATGCAGGTCTAGCATCTCTCCCTCTTCATGGTTCTTTCAGGTCCTTAGGGATAAAGGCACACTCTTCTCTGCACCATGGCTTTTCACCTACAACGAGGCCTCCTGAGATGAAAAGCAGTGCAAGATTTGAGCAAGGATATATTGGTTTTCCAATATTCTTGGAGGAGGATGAGGCAGAACTCTTGTGGCAAGGTAGTTACCATCAGGTTCCCTCTAAGGGAAGCCATACTCATCAGAATTTCACACTGAGTGGAAGCTCAAATTTGAGTTTTATTGGGGTGAATCATCCAACTGTTGAGATAGAGAACTCAACACCTGAGTTGACATTGAAACTTTGA 789 0.4411 MKQHFDLEVVASAEYESEISSQVASNISIQETYAGPCSNNLTNNSSNVTKPIEPHLQSDAISLDLTLNFNNNDLVVGDSRGLSFSSTTSESRNDPPSQSTHSQTMPRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKRALRMGFFSERYAGLASLPLHGSFRSLGIKAHSSLHHGFSPTTRPPEMKSSARFEQGYIGFPIFLEEDEAELLWQGSYHQVPSKGSHTHQNFTLSGSSNLSFIGVNHPTVEIENSTPELTLKL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02289 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Spst1g02289 262 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 19 195 IPR044246 GO:0009788
Spst1g02289 262 FunFam Zinc finger protein 2 85 153 - -
Spst1g02289 262 SUPERFAMILY beta-beta-alpha zinc fingers 107 136 IPR036236 -
Spst1g02289 262 Gene3D Classic Zinc Finger 85 150 - -
Spst1g02289 262 MobiDBLite consensus disorder prediction 82 104 - -
Spst1g02289 262 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02289 Spst-Chr1 31616776 31617564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02289 107 262 C2H2 Transcription Factor Family AT1G66140 50.276 2.61e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g02289 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02289 1 31616776 31617564 Spst1g02289 1 31616776 31617564 ECH
Spst8g00347 8 3147692 3148465 Spst1g02289 1 31616776 31617564 PCT