Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02287 ATGGTGTTGTCTTGGACTAGAAGAAACATTTTTCGTCTTGTCAAGAAGGAGAAGAGACAGACTCAAGGTGGTGGTTTTGGTGGTGAGTTGGAGGTGGAGGTTGTGATCCCCAACCACTTTCAGTGTCCGGTGAGTTTAGAGTTGATGACTGACCCGGTGGCTTTATCAACTGGCATCACCTACGACAGGGTGAGCATTGAAAAGTGGATTGAGGGAGGTAACAAGACCTGCCCCGTCACCAACCAGGTGCTCACAACCTTTGATAGCATCCCCAACCATGCCATTCGTAGGATGATTCAGGATTGGTGTGTTGAAAATAATTCTTATGGGATTGAAAGGATCCCCACTCCTCGGATTCCTCTCTCCAACTACGAGATTTCTCAGACATGTACGAGGATCTTGGCGGCTTGTCAGCGTGGGGATGATAAAAAGTGCCAGGAGTTGGTTGGAAAGATTAAGGTTTGGGGGAGAGAGAGTGAGAGGAACAAGAGGTGCATAATTGGGAATCATGCTAGTACTAATCCTGGTGTTGGTGCAGTTCTTACAAATGCCTTTGATTGTTTCTCAAGTGGTGACTCTTTTGACAAGCATGTGGCTGTTTTGGAGGAGATTTTGGAGGTGTTGACATGGATGACCCCACTTGAGGAAGAGAGTGTACCTAAATTAAGTTCAAAAGCCTCATTGAATTGCATGGTTTGGTTTCTAGAGGGAAAAGACCTTGCATCAAGGCAAAGTGCTGCTTTGTTGCTCAGGCAAGTGCGTGTTCAAGAATTGGCCAAAGTTGGAAAAGTTGTTGAAGCTTTGGTTAACATGATTAGGGAACCTATTGGGAGTACTTCCACCAAGGCTTGTTTGGCAACAATTTTTAACTTAGTGTCATCGACTGAGAATAGAGGGGAAATTGCTCAAAGATTTGTGGAGTTGGGTTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGAGAAAGGGGTGTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATACCCAAAAGGGGAAGGAGGTTGTTAATAATAATGCTCTTACTCTGCCTCTTGTCATTAAGAAGCTTTTGAGGGTGTCACCATTGGCTTCAAGTTTTGCTGTCTCTATTCTTAGGAAGAATTGTGACAAGAATGAGGAAGGGGTTCTGATTGATGCAGTTCATGTAGGGGCTTTTCAAAAGCTCTTGGTTTTGCTACAGGTTGGTTGTGATGAGAGCACAAAGGAGAATGCTACAGAGTTGTTGAAACTGTTGAACGGTTATAGGAACAAAGCGGAGTGCACTGACTCATCATTGGATTTCAAATATCTTAAGAAGTCATTCTGA 1338 0.441 MVLSWTRRNIFRLVKKEKRQTQGGGFGGELEVEVVIPNHFQCPVSLELMTDPVALSTGITYDRVSIEKWIEGGNKTCPVTNQVLTTFDSIPNHAIRRMIQDWCVENNSYGIERIPTPRIPLSNYEISQTCTRILAACQRGDDKKCQELVGKIKVWGRESERNKRCIIGNHASTNPGVGAVLTNAFDCFSSGDSFDKHVAVLEEILEVLTWMTPLEEESVPKLSSKASLNCMVWFLEGKDLASRQSAALLLRQVRVQELAKVGKVVEALVNMIREPIGSTSTKACLATIFNLVSSTENRGEIAQRFVELGLVSLLLEAIVDGEKGVCEKALGVLDCICDTQKGKEVVNNNALTLPLVIKKLLRVSPLASSFAVSILRKNCDKNEEGVLIDAVHVGAFQKLLVLLQVGCDESTKENATELLKLLNGYRNKAECTDSSLDFKYLKKSF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02287 445 SUPERFAMILY RING/U-box 30 112 - -
Spst1g02287 445 ProSiteProfiles U-box domain profile. 35 109 IPR003613 GO:0004842|GO:0016567
Spst1g02287 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 109 IPR013083 -
Spst1g02287 445 Pfam U-box domain 36 107 IPR003613 GO:0004842|GO:0016567
Spst1g02287 445 PANTHER WDSAM1 PROTEIN 33 431 IPR045185 GO:0061630
Spst1g02287 445 FunFam RING-type E3 ubiquitin transferase 30 112 - -
Spst1g02287 445 SUPERFAMILY ARM repeat 195 422 IPR016024 -
Spst1g02287 445 Gene3D - 174 433 IPR011989 -
Spst1g02287 445 CDD RING-Ubox_PUB 37 88 IPR045210 -
Spst1g02287 445 SMART Ubox_2 39 102 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02287 Spst-Chr1 31601353 31602690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02287 28 445 U-box Gene Family AT5G37490 48.941 9.76e-129 377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02287 1 31601353 31602690 Spst1g02287 1 31601353 31602690 ECH
Spst8g00345 8 3127909 3129216 Spst1g02287 1 31601353 31602690 PCT