Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01927 ATGGATAATGGGTGTTTCTCTTCCCCTCGATGTGATTTCCCTGCTGGTCTGCGAGTTCTAGTTGTGGATGATGATCCTACGTGGCTCAAGATCCTTGAGAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTGGCAAGGCATGCTCTAAACTTGCTTCGGGAAAGGAAGGACGGATATGATATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTGATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTCATGAAAGGTGTTCAACATGGAGCATGTGACTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAGCATGTCTTTAGAAAAAGGATACACGAGGCAAAAGAATTTGAAAGCTTTGAGAGTTTTGAGAGCATTCACTTAATGAGAAATGGCTCAGAGCTATCAGATGATGGGAACTTGTTTGCTGTAGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGCACGGATCCATCTTCTACCAAGAAAGCTAGAGTAGTCTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCAGATTGGATTTGATAAAGTTGGGCCCAAGAAAATACTAGACCTGATGAATGTTCCATGGCTGACCAGAGAGAATGTTGCTAGCCACTTGCAGAAATATCGGCTTTATTTGAGTAGGATTCAGAAAGAAAACGATCAAAGATCTTCCTCGTGTGGAATGAAGCATTCAGATTTTCCTTCAAAAGATCTGGGAAGTTTTGGTTTTCAAAACCCAGTAAACAAGCAACGAGATGTTTCAATTGACAGCTACAATTATTCGGATGGATCATTACAGCTTCCCAACGTGGAAACTAAAAGTCATGAAGGCGATCCCAAGAGAATTGTTTCACAGTCCACCATAGCAAAAAAAGGAAGGGCTTTGAATGGTAGCATCACTGACACAAATATGAGAGAGAGTTTACGGGTAGGCCTTAATCAAACTTTTGCCCCTCTGGAGTCAGAAGGAAACCATGCAGTGTTTGATTGCTCCATACCAACACAGTACTCTTGGACTGAAGTTCCAGACATGCAACTCAAAGAAGAACACAAGTCACTCGTTCATTTAGAAGATAGTTTCAATCAGATGCCATTACATGGTAAGCAGCATCACATCCACGTTGATCAATCACAATCAGTTGCTTCAATTAGTTCAGCTCCCTCTATTACGGGGGAAGAGGTTGCTGCTTGTATAGAAGCAAAACCTTTGTTTTCAGATTACAAGAATGATCATGGCAGTTCTGTGAATTCAATAGGGAATGCAGTTGACACCTTTCCAATTCAACCAGGAAGTCTTGTTATGAATGATCAATCTTTGGAACCCATTTCCACAACAAATTCAGGATTGAAAACACAGGGATATAATAATCTCAGTTGCATTCCTGATCTGGAAATTTACCAAAGAAGCCTTCTTTTGGGCAGTGAGGCAGCTTCTGCACCTTTGGATGCGGACTTGCATTTCCATTGGCTACAAGGTGACTGCTATAATATGAACTTTGGTCTGCAGAGTATAGGAATGTCTGAATATTATGATCCAGGACTTATTGCAGAAGCTCCAACTCACTTATATGATTCAGCCGATTACTCAGTTATAGATCAAGGTCTATTCATAGCATGA 1743 0.4073 MDNGCFSSPRCDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAKEFESFESFESIHLMRNGSELSDDGNLFAVEDVTSTKKRKDADNKHDDKECTDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRIQKENDQRSSSCGMKHSDFPSKDLGSFGFQNPVNKQRDVSIDSYNYSDGSLQLPNVETKSHEGDPKRIVSQSTIAKKGRALNGSITDTNMRESLRVGLNQTFAPLESEGNHAVFDCSIPTQYSWTEVPDMQLKEEHKSLVHLEDSFNQMPLHGKQHHIHVDQSQSVASISSAPSITGEEVAACIEAKPLFSDYKNDHGSSVNSIGNAVDTFPIQPGSLVMNDQSLEPISTTNSGLKTQGYNNLSCIPDLEIYQRSLLLGSEAASAPLDADLHFHWLQGDCYNMNFGLQSIGMSEYYDPGLIAEAPTHLYDSADYSVIDQGLFIA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01927 580 FunFam Two-component response regulator 195 258 - -
Spst1g01927 580 Gene3D - 195 258 - -
Spst1g01927 580 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Spst1g01927 580 FunFam Two-component response regulator 17 173 - -
Spst1g01927 580 SUPERFAMILY CheY-like 16 146 IPR011006 -
Spst1g01927 580 MobiDBLite consensus disorder prediction 175 195 - -
Spst1g01927 580 CDD REC_typeB_ARR-like 19 133 - -
Spst1g01927 580 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Spst1g01927 580 Gene3D - 17 185 - -
Spst1g01927 580 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Spst1g01927 580 SMART REC_2 17 129 IPR001789 GO:0000160
Spst1g01927 580 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Spst1g01927 580 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 317 IPR045279 GO:0009736
Spst1g01927 580 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01927 Spst-Chr1 27530039 27533650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01927 13 265 Response Regulator Gene Family AT2G25180 56.641 2.06e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Spst1g01927 Response_reg 1.6e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01927 1 27530039 27533650 Spst1g01927 1 27530039 27533650 ECH
Spst1g01927 1 27530039 27533650 Spst3g00116 3 2079447 2083480 PCT