Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01850 ATGGCTTCTACTGGCAATGAGTTTTATGCGCTTATGCTTGTGGTGGTGGTTAGCTCCATGGTGGCTGCATGTGGTGCTAACTTCTTCCAAGACTTTGATCTAACATGGGGTGATCACCGTGCTAAGATATTGGGTGGTGGTCAGCTTCTATCTCTTTCCCTGGACAAAGTCTCTGGCTCTGGCTTCCAATCCAAGAAAGAGTACCTATTTGGGAGGATCGATATGCAGCTCAAACTCGTTGCTGGCAACTCTGCTGGCACTGTCACTGCTTACTACTTGTCATCTCAAGGGCCAACTCATGATGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGTGACCCCTACATTCTCCACACAAACGTGTTTACCCAAGGCCAAGGGAACAGAGAGCAACAGTTCTACCTCTGGTTCGATCCCACCAGGAACTTCCACACTTACTCCATCATCTGGAAGCCCCAACACATTATCTTCTTGGTCGATAACATTCCAATAAGGGTGTTCAAGAATGCAGAGACAATTGGTGTCCCTTTCCCAAAGAACCAGCCCATGAGAATCTATTCTAGCCTGTGGAATGCAGATGACTGGGCAACCAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAGGCACCATTTACAGCATACTACCGCAATTTCAAAGCCACAGAGTTCTCCGTGTCTTCCAATTCGTTCTCCGATGGTGCACGGCAGACCACCGAGCTTGATGCCTATGGCAGAAGAAGACTGAGATGGGTTCAGAAGTACTTCATGATCTATAACTACTGCAACGACCTTAAGCGATTCCCACAAGGCCTTCCCGTTGAGTGCAAGCGCTGA 837 0.4791 MASTGNEFYALMLVVVVSSMVAACGANFFQDFDLTWGDHRAKILGGGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAETIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSVSSNSFSDGARQTTELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGLPVECKR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01850 278 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 2 216 IPR000757 GO:0004553|GO:0005975
Spst1g01850 278 Gene3D - 13 278 - -
Spst1g01850 278 CDD GH16_XET 25 276 IPR016455 GO:0010411|GO:0016762|GO:0042546
Spst1g01850 278 ProSitePatterns Glycosyl hydrolases family 16 active sites. 102 112 IPR008263 GO:0004553|GO:0005975
Spst1g01850 278 Pfam Glycosyl hydrolases family 16 30 209 IPR000757 GO:0004553|GO:0005975
Spst1g01850 278 PRINTS Glycosyl hydrolase family 16 signature 60 78 IPR008264 GO:0004553|GO:0005975
Spst1g01850 278 PRINTS Glycosyl hydrolase family 16 signature 136 153 IPR008264 GO:0004553|GO:0005975
Spst1g01850 278 PRINTS Glycosyl hydrolase family 16 signature 118 131 IPR008264 GO:0004553|GO:0005975
Spst1g01850 278 PIRSF EndGlu_transf 2 278 IPR016455 GO:0010411|GO:0016762|GO:0042546
Spst1g01850 278 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 239 276 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Spst1g01850 278 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 277 IPR013320 -
Spst1g01850 278 FunFam Xyloglucan endotransglucosylase/hydrolase 14 278 - -
Spst1g01850 278 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 25 276 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01850 Spst-Chr1 26650331 26651707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01850 14 278 Glycoside Hydrolase AT4G14130 77.656 2.98e-162 450
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01850 1 26650331 26651707 Spst1g01850 1 26650331 26651707 ECH